Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l16r
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 430 PEWPQSASYWLTLSPDSIYDTLT 362
           P+W Q  + WL  SP+  YD +T
Sbjct: 652 PKWLQVLALWLNHSPN--YDQVT 672


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
 Frame = +1

Query: 61  DLLGRRRRTCAG------CEGGRDPKSQP 129
           D +GR +RTC+G      CEG  + + QP
Sbjct: 51  DEIGRLKRTCSGDISVTKCEGFCNSQVQP 79



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 495 SKFLIALLYLYSLTSLWEITSPPN 424
           S FLI ++++YS  ++ ++T   N
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDEN 35


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
 Frame = +1

Query: 61  DLLGRRRRTCAG------CEGGRDPKSQP 129
           D +GR +RTC+G      CEG  + + QP
Sbjct: 51  DEIGRLKRTCSGDISVTKCEGFCNSQVQP 79



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 495 SKFLIALLYLYSLTSLWEITSPPN 424
           S FLI ++++YS  ++ ++T   N
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDEN 35


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 148 RCILPTIRSYP 180
           RC+L T+R YP
Sbjct: 402 RCLLETLRMYP 412


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 355 QKRYNDPIFYITENGWSSPPTNGLLDDDR 269
           +  YND  FY   NG +S  ++ L   ++
Sbjct: 135 ENNYNDNYFYSKSNGSNSSNSDVLFKQNK 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,573
Number of Sequences: 438
Number of extensions: 4749
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)