Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l16f
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   3.7  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    26   3.7  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   4.9  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   8.6  
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...    25   8.6  

>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 508 SSNQMEASGLAKPPSSCSF*GKSQWNKVIIGVMPYF 401
           ++   E +G+ +  S C   GK+   K+++ V+PYF
Sbjct: 22  TAEDREGNGVQEVESLCMECGKNGTTKLLLTVIPYF 57


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 514 RAWSTRISVT--ESKHWITINEPREICYEGYGS 606
           RAW  +I     ESK   TI+EP +I   G+GS
Sbjct: 100 RAWKLQIHSKNLESKIEATISEPEQIPCPGFGS 132


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 463 NWEASPIHWLPFGLKTTRAWSTR 531
           NWEA+P H LP  L  TR +  R
Sbjct: 11  NWEATPYH-LPIFLAQTRGYYER 32


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 561 DPMFXLCHRNSCRPRARSLQTKWK 490
           DP     +  S +PR   LQT WK
Sbjct: 126 DPEISTANNPSAKPRRTRLQTAWK 149


>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 566 MVIQCXDSVTEIRVDHARVVFKPNGS 489
           +V +C D+ T++RVD   + F  +G+
Sbjct: 87  LVHKCPDAFTQVRVDRGAIKFLLSGA 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,274
Number of Sequences: 5004
Number of extensions: 43098
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)