Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l16f
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)        185   3e-47
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             181   4e-46
SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)                 42   4e-04
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   1.3  
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_10714| Best HMM Match : Retrotrans_gag (HMM E-Value=5.4e-09)        30   1.3  
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)            28   5.2  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
          Length = 204

 Score =  185 bits (450), Expect = 3e-47
 Identities = 78/156 (50%), Positives = 111/156 (71%)
 Frame = +3

Query: 81  RFPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAAVKDGSTGDIAANSYHNVER 260
           +FP+ F+ G ATA++QIEGAWNEDGKG NIWD  +H     + +    DIA +SYH  + 
Sbjct: 14  QFPESFIWGVATAAHQIEGAWNEDGKGPNIWDAFSHKT-GNIHNNENADIACDSYHKTDE 72

Query: 261 DVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLFHW 440
           D+++++ LG+  YRFS+SW+RILP G  + +N++GV+YYNR+I+++L   I P+ TL+H+
Sbjct: 73  DIQLLKSLGVSHYRFSISWARILPDGLLDVVNKSGVEYYNRVIDKLLAVNIQPVATLYHF 132

Query: 441 DLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRV 548
           DLPQ LQ+ GG+ N     WF  YARV +  FGDRV
Sbjct: 133 DLPQALQDKGGWLNSRVIEWFAGYARVCFKLFGDRV 168



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 556 WITINEPREICYEGYG 603
           W+TINEP E    GYG
Sbjct: 171 WLTINEPHEEALNGYG 186


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  181 bits (441), Expect = 4e-46
 Identities = 79/156 (50%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
 Frame = +3

Query: 84  FPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAA-VKDGSTGDIAANSYHNVER 260
           FP DF  G+AT++YQIEGAW+ DGKG  +WDYLTH++  + +    TGD+A +SYH  + 
Sbjct: 36  FPADFEWGSATSAYQIEGAWDVDGKGLGLWDYLTHSHQFSHLFKNQTGDVACDSYHKYKE 95

Query: 261 DVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLFHW 440
           DV+++R LG+  YRFS+SW RILP G    IN  G++YYN LINE+L Y I P+ T++HW
Sbjct: 96  DVQLLRNLGVKAYRFSISWPRILPKGTKEIINTKGIEYYNNLINELLHYNIQPVATIYHW 155

Query: 441 DLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRV 548
           DLP   +  G + N      F DYA + + NFGDRV
Sbjct: 156 DLPVPFRMAGSWTNSSIIEHFNDYAEICFKNFGDRV 191


>SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)
          Length = 398

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/76 (28%), Positives = 41/76 (53%)
 Frame = +3

Query: 255 ERDVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLF 434
           E+D+E+M+ LGL+V R    W  + P+    + NE  ++   +++    KYGI  ++ + 
Sbjct: 199 EQDMELMQSLGLNVLRLGYMWPGVEPT--RGKYNETYIEVIKKIVTLSAKYGIYVLLDM- 255

Query: 435 HWDLPQKLQELGGFAN 482
           H D+  +   + GF N
Sbjct: 256 HQDVMSRKFCVEGFPN 271


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 420 MITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVXTLDHH 566
           M   + WD  +KL+ L  +    AS+WF  + R  +  +   +  L +H
Sbjct: 189 MTEFYRWDDERKLRALPLYLTGNASVWFNSHPRAAFNTWDAALTQLKNH 237


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 420  MITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVXTLDHH 566
            M   + WD  +KL+ L  +    AS+WF  + R     +   +  L +H
Sbjct: 2526 MTEFYRWDDDRKLRALPLYLTGNASVWFNSHPRAALNTWDAALTQLKNH 2574


>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 420 MITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVXTLDHH 566
           M   + WD  +KL+ L  +    AS+WF  + R     +   +  L +H
Sbjct: 205 MTEFYRWDDDRKLRALPLYLTGNASVWFNSHPRAALNTWDAALAQLKNH 253


>SB_10714| Best HMM Match : Retrotrans_gag (HMM E-Value=5.4e-09)
          Length = 132

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 420 MITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVXTLDHH 566
           M   + WD  +KL+ L  +    AS+WF  + R     +   +  L +H
Sbjct: 24  MTEFYRWDDERKLRALPLYLTGNASVWFNSHPRAALNTWDAALTQLKNH 72


>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 670

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 420 MITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVXTLDHH 566
           M   + WD  +KL+ L  +    AS+WF ++ R     +   +  L +H
Sbjct: 1   MTEFYRWDDDRKLRALPLYLAGNASVWFNNHPRAALNTWDAALAQLKNH 49


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 369  DYYNRLINEMLKYG----ITPMITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNF 536
            +Y++ LIN+ ++      +   +   H+ L +K QEL    N + + +   +AR+   N 
Sbjct: 1026 EYFDLLINDCVEVNDVFIVNEELIQVHYKLGEKFQELKPHTNVVVAAFTTSFARLKLYNV 1085

Query: 537  GDRV 548
             DR+
Sbjct: 1086 MDRL 1089


>SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)
          Length = 626

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 420 MITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVXTLDHH 566
           M   + WD   KL+ L  +    AS+WF  + R     +   +  L +H
Sbjct: 123 MTEFYRWDDEIKLRALPLYHTGNASVWFNSHPRAALNTWDAALTQLKNH 171


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 537  RNSCRPRARSLQTKWKPVDWRSLPVPAASEASP 439
            ++S  P+A  L  +  P DW + P PAAS+  P
Sbjct: 2818 KDSLTPQASPLPGQGPPADWMNSP-PAASKPGP 2849


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,736,007
Number of Sequences: 59808
Number of extensions: 324227
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)