Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l16f
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 126 2e-29
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 122 2e-28
AL132904-15|CAC35848.2| 518|Caenorhabditis elegans Hypothetical... 30 1.1
U61949-6|AAB03154.1| 166|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical pr... 28 4.6
U41007-18|AAA82262.2| 295|Caenorhabditis elegans Hypothetical p... 28 4.6
AF040641-4|AAB94945.1| 451|Caenorhabditis elegans Hypothetical ... 27 8.0
AF040641-3|AAT81205.1| 509|Caenorhabditis elegans Hypothetical ... 27 8.0
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 126 bits (303), Expect = 2e-29
Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
Frame = +3
Query: 81 RFPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAAVKDGSTGDIAANSYHNVER 260
+FP +F + TATA+YQIEGA N DG+G + WD + N + D S D++ +
Sbjct: 6 KFPKNFQLATATAAYQIEGAKNLDGRGFSTWDSIRSEN-GRIHDNSDPDLSCEGRLKYKE 64
Query: 261 DVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLFHW 440
DV ++ ++G+ YRFS+SWSRILP G INE G+ +Y + + GI P++TLFH+
Sbjct: 65 DVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHF 124
Query: 441 DLPQKLQELG-GFANPLASIWFEDYARVVYTNFGDRVXT 554
D+P + + G + N FE +A + + FGD V T
Sbjct: 125 DMPLSIYDNGTSWLNKENCEHFEKFADLCFQKFGDLVKT 163
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 122 bits (294), Expect = 2e-28
Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Frame = +3
Query: 81 RFPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAAVKDGSTGDIAANSYHNVER 260
+FP +F + TATA+YQIEGA + +G+G + WD + P + D S D++ + +
Sbjct: 6 KFPKNFKLATATAAYQIEGAKDLNGRGFSTWDAI-RLEPGRILDNSDPDLSCDGLLKYKE 64
Query: 261 DVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLFHW 440
DV ++ E+G+ YRFS+SWSRILP G + INE G+ +Y L + + I P++TLFH+
Sbjct: 65 DVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHF 124
Query: 441 DLPQKLQELG-GFANPLASIWFEDYARVVYTNFGDRVXT 554
D+P + + G + N FE +A + + FGD V T
Sbjct: 125 DMPLAIYDNGTAWLNRENCEHFEKFADLCFQKFGDLVKT 163
>AL132904-15|CAC35848.2| 518|Caenorhabditis elegans Hypothetical
protein Y111B2A.19 protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 117 ASYQIEGA--WNEDGKGENIWDYLTHNNPAAVKDGSTGDIAANSYHNVER 260
A YQ++ W+ D E++ D L+H NP + D N H + R
Sbjct: 459 ALYQMDAPDNWHHDDPSEDLDDLLSHENPETLDDTMRNSNTDNDLHLILR 508
>U61949-6|AAB03154.1| 166|Caenorhabditis elegans Hypothetical
protein F49E8.6 protein.
Length = 166
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 43 WCAAPHYRPSSREGFRMTSSSGLPPPPT 126
+CA P SS TSS LPPPPT
Sbjct: 126 YCAPPPGPSSSAPPTLPTSSGNLPPPPT 153
>Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical
protein F31F6.5 protein.
Length = 913
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 542 VTEIRVDHARVVFKPNGSQWIGEASQF 462
+TE+RVD VF P+ ++W E S F
Sbjct: 46 MTELRVDDPSYVFTPSDARWRREISVF 72
>U41007-18|AAA82262.2| 295|Caenorhabditis elegans Hypothetical
protein C33H5.1 protein.
Length = 295
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 387 INEMLKYGITPMITLFHWDLPQKLQELGGFA--NPLASIWFEDYARVVYTNFGDRVXT 554
I++ ++ GIT +FH D +L E + P W+ D+ R+V N D+ T
Sbjct: 234 IHKDIENGITGERKMFH-DFVWRLMEDKRYIMIRPFNVFWYHDFIRIVLINVADKECT 290
>AF040641-4|AAB94945.1| 451|Caenorhabditis elegans Hypothetical
protein D1069.3a protein.
Length = 451
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = +3
Query: 72 QQRRFPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAAVKD 212
Q PD L+ + + ++ W+++ +GE +W H + +D
Sbjct: 295 QYEMLPDTLLVVNSLRNSLLDNMWSKEKRGELMWTRPQHKDQTKRRD 341
>AF040641-3|AAT81205.1| 509|Caenorhabditis elegans Hypothetical
protein D1069.3b protein.
Length = 509
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = +3
Query: 72 QQRRFPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAAVKD 212
Q PD L+ + + ++ W+++ +GE +W H + +D
Sbjct: 295 QYEMLPDTLLVVNSLRNSLLDNMWSKEKRGELMWTRPQHKDQTKRRD 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,011,486
Number of Sequences: 27780
Number of extensions: 240443
Number of successful extensions: 733
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -