Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l16f
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 478 PIHWLPFGLKTTRAWSTRISVTESK-HWITI--NEPREIC 588
           P+H+LPFG         R +V ++K   ITI  N   E+C
Sbjct: 431 PMHYLPFGDGPRNCIGARFAVYQTKVGLITILRNHKVEVC 470


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 12  MKFFLALGFLVVCCSALSTKQQRRFPDDFLIGTATASYQIEGAWNEDGKGENIWDY 179
           M  F ALG  VV    L  + Q  +  D      +  Y       E  KG++IWDY
Sbjct: 271 MFVFAALGEFVVV-KVLDLRSQLEY--DLQTSIMSRHYSTRAIVIE--KGQSIWDY 321


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 462 ELGGFANPLASIWF 503
           E+GG  +P A +WF
Sbjct: 880 EIGGLQHPGAVVWF 893


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 195 PAAVKDGSTGDIAANSYHNVERDVEMM 275
           P  V DG   ++      N+E D E+M
Sbjct: 22  PKVVYDGPIYELRQIEEENIEPDTELM 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,720
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)