Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l15f
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    31   0.17 
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    30   0.30 
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    29   0.40 
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    29   0.69 
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    28   0.91 
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            27   2.1  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   2.1  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.8  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    26   3.7  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   4.9  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   6.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   6.4  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   6.4  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   8.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   8.5  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.5  

>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 363 VYGRPGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFE 542
           V    G +++G    +  IV  +        L +   DN++ LW +N +  V    HVF 
Sbjct: 348 VISTDGTQVFGVLEGHTDIVLTLDSSEDGVWLATGAKDNTVRLWNLNIEDNVYKCIHVFT 407

Query: 543 GKNKKISAICV 575
           G    ++A+ +
Sbjct: 408 GHTASVTAVAL 418


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 420 VTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE-LKSH 533
           ++Q+ + TG+  L S  DD ++ +W+  ++  V  LK H
Sbjct: 99  ISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGH 137


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +3

Query: 381 VELYGQHTNYESIVTQIHF-ITGTGRLISLCDDNSLHLWEINEKSLVELKSHV-FEGKNK 554
           VEL G++ N++  V +  F +TGT  L S  DD  + LW+ +  +L +  S V  E K +
Sbjct: 279 VELIGEYDNHKCQVWRCRFNVTGT-ILSSSGDDGCVRLWKASYANLFKCISVVSLEKKPE 337

Query: 555 KI 560
           K+
Sbjct: 338 KL 339


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 399 HTNYESIVTQIHFITGTGRLI-SLCDDNSLHLWEIN 503
           H  ++  V ++ F     + I S+ DDN LH+W+ N
Sbjct: 369 HAGHKGTVNEVDFDPFEAQCIASVADDNELHIWKPN 404


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +3

Query: 441 TGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALL 602
           TG   +++  DD S+H W++  K+ V L+S  F+ ++ +I ++C     K  L+
Sbjct: 233 TGEIGMVTGSDDGSVHCWDV--KTGVSLQS--FQFRSSQILSLCFRPKYKMLLV 282


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +3

Query: 384 ELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVEL 524
           E + +   Y   + Q+ F     R+ ++ +D  L LW+  +   +EL
Sbjct: 53  EKHREAAAYGEAIRQVAFSKDYSRMATVSEDKCLRLWDSTQPDKIEL 99


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 399 HTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAI 569
           HT     VT + F      + S  DD+++ LW     S   ++S   E + K + ++
Sbjct: 312 HTKRMQRVTAVKFSMDAQYIFSGSDDSNVRLWRARASSRASIRSTREENRLKYLDSL 368


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 422 DYRFVIGVLAVEFDAWSAVDLERSGGGTKR 333
           D+ F++ +L   F  WS VD+E SG  +KR
Sbjct: 62  DWIFLVDIL--NFSFWSDVDVEDSGKHSKR 89


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 408 YESIVTQIHFITGTGRLISLCDDNSLHLWEIN---EKSLVELKSHVFEGKNKKISAICVE 578
           ++ IV ++  +  +   IS   DN++ +W+     E +L    S + + + +K +    +
Sbjct: 196 HKDIVERVRSLESSSVFISASADNTVGIWDFERSPETTLESFSSSISKKRRRKNAEFTPQ 255

Query: 579 SSAKNALL 602
           + A++ L+
Sbjct: 256 AGARSPLI 263


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 399 HTNYESIVTQIHFITGTGRLISLCDDNSLHLWEI 500
           H N E +VT +  +T + R I++  D +L +W +
Sbjct: 492 HGNLE-VVTALKMMTSSNRFITVGTDATLRIWAL 524


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +3

Query: 447 TGRLISLCDDNSLHLWEINEKSLV 518
           +GRL +  +DN++ +W+++  +L+
Sbjct: 189 SGRLYTASEDNTIRIWDVSTGNLL 212


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 183 MLKFIRGKGQQPSAERQKLQNELFAFRKTVQ 275
           +LK  + + +Q   ERQK+Q E+  +RK+ Q
Sbjct: 892 LLKEKQERERQLQEERQKMQEEVLEWRKSQQ 922


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +3

Query: 372 RPGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKN 551
           RP    +G   N   +V   ++I  + R      D++  +W ++  S  E   HV  G  
Sbjct: 294 RPLKVYFGHTDNVLGVVVSENYIISSSR------DHTARVWRLDATSPAEACMHVLRGHL 347

Query: 552 KKISAICVESSAKNALL 602
             +++  V+ S+K  L+
Sbjct: 348 ASVNS--VQYSSKTGLI 362


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 316 GSHASADALCGKPCWTVFRNAN 251
           GS  S D + G+  W++F NAN
Sbjct: 92  GSLHSYDRITGQELWSLFTNAN 113


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +3

Query: 396 QHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEIN 503
           Q ++Y+++ T + + +   R+I+  DD  + +W++N
Sbjct: 335 QQSHYDALST-LQYSSDGQRIITGADDGKIKVWDMN 369


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
 Frame = +1

Query: 199 AARASSPLLRGRSCRMNY--LHSERQS-----SMASRTERQHSRG-IRSS--DSRRL--- 339
           A R+SS   RG S R N    H +        S +    R+ + G +RSS  D+RR    
Sbjct: 255 ADRSSSYSRRGDSYRSNRSRAHDDDDEDDYSFSRSKSLSRKTAGGSLRSSKMDNRRSKYA 314

Query: 340 -VPPPERSRSTADQASNSTANTPITNR*SHRYISSQGQ 450
             P P RSRS +D+   S  ++ ++   S ++ S   +
Sbjct: 315 DTPSPRRSRSYSDEDEESVYSSDVSTESSSQFSSRSSE 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,336
Number of Sequences: 5004
Number of extensions: 44178
Number of successful extensions: 177
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)