Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l15f
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 37 0.011
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 31 0.53
07_03_0971 + 23038409-23039134,23040321-23040611 30 1.2
03_02_0393 - 8075982-8076989 30 1.2
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 30 1.6
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 29 2.1
03_04_0142 - 17656751-17657554 29 2.1
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 29 2.1
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35... 29 2.8
12_02_1177 - 26708215-26708309,26708355-26708392,26708476-267095... 29 3.7
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 29 3.7
10_02_0201 - 6764313-6765263 28 5.0
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 28 5.0
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 28 5.0
07_01_0671 + 5036069-5037670 28 6.5
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 28 6.5
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 28 6.5
10_02_0100 + 5296783-5297568 27 8.7
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 27 8.7
04_03_0401 - 15438674-15438772,15439084-15439348,15439822-154399... 27 8.7
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 27 8.7
>07_03_1781 +
29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 270 VQHGFPHRASALAWDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYESIVTQ-IHFITG 446
+ +G P+ AS LA+DP K++G +E G + S+ + + FI
Sbjct: 29 LHYGIPYTASLLAFDPVQRLLALATLDGRIKIFGGDNIE--GLLISPNSLPYKFLQFIQN 86
Query: 447 TGRLISLCDDNSLHLWEINEKSL 515
G LI++ ++N + +W + + L
Sbjct: 87 QGFLIAISNENEIQVWNLEFRQL 109
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 256 HSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITNR*SHR 429
HS R SR+ + R S RR PP R RS A ++ + +P+ SHR
Sbjct: 217 HSRRSGRSRSRSPARD----RGSPPRRRSPPARRERSPAPRSRSPRRRSPVKTTSSHR 270
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/52 (21%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 381 VELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE-LKSH 533
+++Y H N + + +T ++S +DN +++W++ K++++ L+ H
Sbjct: 253 LKMYSGHVNRKYCLQSAFSVTNGKYIVSGSEDNCVYIWDLQGKNILQKLEGH 304
>03_02_0393 - 8075982-8076989
Length = 335
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Frame = -1
Query: 443 CDEMYLCDYRFVIGVLAVEFDAW--------SAVDLERSGGG 342
CD Y DY +GVL F A+ + +DL RSGGG
Sbjct: 59 CDSSYPGDYHAAVGVLVAAFAAYCFLSTLAFTVLDLARSGGG 100
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 420 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
V + + TG R LI+ DD++ +W+ KS V+ EG ISA+C
Sbjct: 183 VNCVDYFTGGDRPYLITGSDDSTAKVWDYQTKSCVQ----TLEGHTHNISAVC 231
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +1
Query: 277 MASRTER-QHSRGIRSSDSR-----RLVPPPERSRSTADQASNSTANTPITNR*SHR 429
MAS ER +HSR S SR R PP R RS A ++ + +P+ + SHR
Sbjct: 1 MASAVERREHSRRSGRSRSRSPARDRGSPPRRRERSPAARSRSPRRRSPVKSTSSHR 57
>03_04_0142 - 17656751-17657554
Length = 267
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 253 LHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITN 414
+HSE+Q++ S + R S+ RR +PPP ++S + +++ PI N
Sbjct: 139 IHSEQQTTWLSSSSRASGNEGYSNPIRRPLPPPVETQSPS--VNHANHGVPILN 190
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 474 DNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESS 584
DNS H W NEK L E+ H +G K S E S
Sbjct: 513 DNSAHCWMFNEKHLEEIPLHT-DGPELKESVDLTEVS 548
>08_01_0051 -
355392-355450,355507-355634,356271-356425,356883-357012,
357600-357739,358384-358552,360286-360557
Length = 350
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 283 SRTERQHSRGIRSSDSRRLVPPPERSRSTA---DQASNSTANTPIT 411
S T+ Q +RG+ + +++L P P+R+ S A D ++ NTP T
Sbjct: 67 SGTKYQAARGVEEATAKQLRPRPDRTPSIAIPVDSDASPRKNTPET 112
>12_02_1177 -
26708215-26708309,26708355-26708392,26708476-26709563,
26709826-26709945,26710018-26710098,26710696-26710812,
26711122-26711904
Length = 773
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 195 IRGKGQQPSAERQKLQNELFAFRKTVQHGFPH 290
I G+G A+R N FA + + HGFPH
Sbjct: 225 ISGEGSAAGADRGGRINRPFAGMRFILHGFPH 256
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 304 SRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITNR*SHRYISSQGQAV*Y 462
SR SS S +P +R A ++TA P+T R +S QG++ Y
Sbjct: 47 SRHASSSSSSSSLPSCSAARVAVTPAPHATATAPVTMRMRSLSVSFQGESFVY 99
>10_02_0201 - 6764313-6765263
Length = 316
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Frame = -1
Query: 443 CDEMYLCDYRFVIGVLAVEFDAW--------SAVDLERSGGGTKRRESEERIP 309
CD Y DY +G L F A+ + +D+ R+GGG R + +P
Sbjct: 44 CDSAYPGDYSPAVGALVAAFAAYCLVSAAAFAVLDIGRAGGGGGRNRRKYMVP 96
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 211 SSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNS 390
+SP+ RGR Y + S A+ R S + + P P+R++S AD+ S
Sbjct: 30 ASPVNRGRDVASRYKNGLSAHSAATTARRCTSPSPGRTSANECTPEPKRAQS-ADRRRPS 88
Query: 391 TANTPIT 411
T ++ ++
Sbjct: 89 TPSSRVS 95
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 420 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
V + + TG R LI+ DD + +W+ KS V+ EG +SA+C
Sbjct: 201 VNCVDYFTGGDRPYLITGSDDQTAKVWDYQTKSCVQ----TLEGHAHNVSAVC 249
>07_01_0671 + 5036069-5037670
Length = 533
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 377 WSAVDLERSGGGTKRR 330
WS+VD E+ GGG +RR
Sbjct: 165 WSSVDEEQQGGGARRR 180
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/69 (24%), Positives = 26/69 (37%)
Frame = +1
Query: 199 AARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQ 378
+A SSP + S R H A+ +RQ GI+ + S + +TA
Sbjct: 44 SASTSSPPVTSPSARQQPHHHHPPPPQAAPPDRQRDDGIKEAKSSDAAAAAAQKTATATA 103
Query: 379 ASNSTANTP 405
+ T P
Sbjct: 104 VTRPTTTAP 112
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 402 TNYESIVTQIHFITGTGRLISLCD-DNSLHLWEINEKSLVEL 524
T + + V + F LI CD DN + W IN ++V +
Sbjct: 689 TGHSASVMSLDFHPNKDDLICSCDGDNEIRFWSINNGNIVRI 730
>10_02_0100 + 5296783-5297568
Length = 261
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 232 RSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPIT 411
R C L ++SSMA ER + + D R P + S T + + +TP+T
Sbjct: 40 RLCDEQELRRAKKSSMAEEVERIKGKLVGGEDGGR--PSSDSSEETVVELLRALRSTPMT 97
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 390 YGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEI 500
+ +HTN VT +HF+ L+S D ++ W++
Sbjct: 415 FSEHTN---AVTAVHFMANNHSLLSASLDGTIRAWDL 448
>04_03_0401 -
15438674-15438772,15439084-15439348,15439822-15439915,
15439997-15440099,15440342-15440384,15440420-15440484
Length = 222
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 247 NYLHSERQSSMASRTE----RQHSRGIRSSDSRRLVPPPERSR 363
N H++R+ S T +H +GI++S +RRL+ RSR
Sbjct: 106 NSQHNKRRKSTKHATPWASIERHGKGIKASAARRLILQASRSR 148
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 343 PPPERSRSTADQASNSTANTPITNR 417
PPP RSR T + ST +TP T +
Sbjct: 310 PPPARSRRTPPRTRFSTGSTPDTKQ 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,561,595
Number of Sequences: 37544
Number of extensions: 295795
Number of successful extensions: 1066
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -