SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l15f
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)                      73   2e-13
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                32   0.41 
SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       30   1.3  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   2.2  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          29   2.2  
SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2)                    29   3.8  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             29   3.8  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)              28   5.1  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  28   6.7  
SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)                 27   8.8  
SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
          Length = 1582

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
 Frame = +3

Query: 366 YGRPGVELYGQHTNYESIVTQIHFITGTGRLISLCDD---NSLHLWEINEKS----LVEL 524
           +GRPGV+L   H N ++ + ++HF+   GR+IS+CDD   NS+HLWE+N+K     L E+
Sbjct: 430 FGRPGVQLTACHDN-QTRIQELHFLPEQGRVISVCDDGEQNSIHLWEVNKKDGKSVLEEV 488

Query: 525 KSHVFEGKNKKISAICVESSAKNALL 602
           K+   EG+ KKIS  C+       LL
Sbjct: 489 KTCTLEGRLKKISVCCLSMKTNRLLL 514


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +1

Query: 235  SCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITN 414
            SC   +   +R S ++ R    +S G  S  S    P P +SR+ + + S S A+T    
Sbjct: 1435 SCNSVHASRDRGSCLSVRDRNSYSSGHASDSSFSESPGPRQSRNRSLKRSKSAASTRSET 1494

Query: 415  R*SHRYISSQG 447
              S  Y S +G
Sbjct: 1495 ASSSGYESMRG 1505


>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = +1

Query: 145 TKTSQTVVSGQAEC*SLYAA---RASSPLLRGR-SCRMNYLHSERQSSMASRTERQHSRG 312
           TK  Q +VSG     +   +   + +SP+ RGR +C     H E + S    T       
Sbjct: 597 TKDGQVLVSGPRHVINKDGSIVIQKASPVDRGRYTCTARNSHGEDRVSSTLNTMDPVVPK 656

Query: 313 IRSSDSRRLVPPPERSRSTADQASNSTANT 402
           I S D  R + P  RSR       N TA T
Sbjct: 657 ILSPDDPRTIHPDHRSRVHGTIGDNITALT 686


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 232 RSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPIT 411
           +S +++YL      ++ S+ ERQ +R      +   V  P ++  T+  +SNS A T   
Sbjct: 429 QSEKLDYLRCNWVDTLQSKIERQETRYKGGRITHNFVSSPRQAAYTSGLSSNSIAQTITV 488

Query: 412 N 414
           N
Sbjct: 489 N 489


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/88 (25%), Positives = 36/88 (40%)
 Frame = +1

Query: 193 LYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTA 372
           ++    +S  +RG S         R++    R ER  S G+R    ++          T 
Sbjct: 93  VWVPATNSQNIRGTSFLPPIESRSRKTGNVDRPERSLSAGVRDIPQKQSTESKNIPGPTN 152

Query: 373 DQASNSTANTPITNR*SHRYISSQGQAV 456
             +S+S   T  TN  S R I + GQ++
Sbjct: 153 SISSDSRRITKTTNSNSTRLIRTPGQSI 180


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/91 (27%), Positives = 41/91 (45%)
 Frame = +1

Query: 133  LDFITKTSQTVVSGQAEC*SLYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRG 312
            L+ +TK S T +    EC    A R ++  LR  +   N L+++  +  +  T       
Sbjct: 974  LEIVTKQSATEI----ECDPDVAMRLAT--LRSEASFENTLNNQANAGPSEETS------ 1021

Query: 313  IRSSDSRRLVPPPERSRSTADQASNSTANTP 405
              S+    LVP P +++ T+D  SNS    P
Sbjct: 1022 --SNPKSYLVPAPRKAKPTSDDVSNSVGQRP 1050


>SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2)
          Length = 803

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +1

Query: 133 LDFITKTSQTVVSGQAEC*SLYAARASS--PLLRGRSCRMNYLHSERQSSMASRTERQHS 306
           LD I++  + V+   +        RASS       RS  +N   S  + +  +   R   
Sbjct: 642 LDSISEGKERVIGRSSSFNGRTPRRASSVDSPRNSRSRLLNASSSYERRTQEAGLNRASD 701

Query: 307 RGIRSSDSRRLVPPPERSRSTADQ 378
           R +RS D   +V PPE  +   DQ
Sbjct: 702 RRVRSLDRNEMVSPPELIQLLKDQ 725


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +1

Query: 256 HSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITNR*SHR 429
           H E +S   SRT+R+ SR    S SR    P  RSRS  D  +    +T +++R SH+
Sbjct: 486 HRESRSRSKSRTKRERSRKKSRSRSR----PRSRSRSRGDSLT-GFHSTSLSDR-SHK 537


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 268 QSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTP 405
           +S MA+  +  ++    S+DS+    P   S+S AD  S   A+TP
Sbjct: 243 ESKMAADMKNSNAESSGSNDSKSTESPLSPSQSDADNTSPLKASTP 288


>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
          Length = 260

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +3

Query: 450 GRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 593
           G ++S   D +  +W   +      + H F G    IS++C  +  +N
Sbjct: 27  GSILSASRDRTTRVWVTEDGGRTYSEGHAFAGHKNFISSVCAMAPTEN 74


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
 Frame = +3

Query: 234  KLQNELFAFRKTVQHGFPHRASALAWDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYE 413
            +L N    F ++++ G   R ++LA+                KV+      L    T ++
Sbjct: 1248 RLWNPSDEFLRSLE-GHEDRVTSLAFSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGHD 1306

Query: 414  SIVTQIHFITGTGRLISLCDDN-SLHLWEINEKSLVELKSH 533
                   +      +++ C DN  L +W++  KS   LKSH
Sbjct: 1307 GYPVCCAWNPVDNTMVATCGDNLELLIWDLETKSSTRLKSH 1347


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 262 ERQSSMASRTE-RQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITN---R*SHR 429
           +R+S   SR+  R H +  + S+SR     P++SRS     S   + +P  +   R S R
Sbjct: 209 KRKSRSRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPRSSKR 268

Query: 430 YISSQ 444
           Y SS+
Sbjct: 269 YRSSR 273


>SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 450 GRLISLCDDNSLHLWEINEKSLVELKS 530
           G LIS C ++ +HLW + ++  V ++S
Sbjct: 1   GALISNCPEDCIHLWNLRQEQPVIVQS 27


>SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)
          Length = 856

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 210 GPCRV*TSTFCLPRDDSLRSF 148
           GPC+  T  FC+ R D ++SF
Sbjct: 213 GPCQTPTLGFCVERHDQIQSF 233


>SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 428 LCDYRFVIGVLAVEFDAWSAVDLERS 351
           LC+Y F++      F  W A+D+ RS
Sbjct: 715 LCNYEFIMEAKMKPFRKWQALDMTRS 740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,231,337
Number of Sequences: 59808
Number of extensions: 341958
Number of successful extensions: 1089
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -