Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l15f
(602 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41539| Best HMM Match : PUD (HMM E-Value=0.42) 73 2e-13
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) 32 0.41
SB_10606| Best HMM Match : I-set (HMM E-Value=0) 30 1.3
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 29 2.2
SB_54| Best HMM Match : Actin (HMM E-Value=0) 29 2.2
SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2) 29 3.8
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 29 3.8
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) 28 5.1
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 28 6.7
SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0) 27 8.8
SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
Length = 1582
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Frame = +3
Query: 366 YGRPGVELYGQHTNYESIVTQIHFITGTGRLISLCDD---NSLHLWEINEKS----LVEL 524
+GRPGV+L H N ++ + ++HF+ GR+IS+CDD NS+HLWE+N+K L E+
Sbjct: 430 FGRPGVQLTACHDN-QTRIQELHFLPEQGRVISVCDDGEQNSIHLWEVNKKDGKSVLEEV 488
Query: 525 KSHVFEGKNKKISAICVESSAKNALL 602
K+ EG+ KKIS C+ LL
Sbjct: 489 KTCTLEGRLKKISVCCLSMKTNRLLL 514
>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
Length = 1671
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +1
Query: 235 SCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITN 414
SC + +R S ++ R +S G S S P P +SR+ + + S S A+T
Sbjct: 1435 SCNSVHASRDRGSCLSVRDRNSYSSGHASDSSFSESPGPRQSRNRSLKRSKSAASTRSET 1494
Query: 415 R*SHRYISSQG 447
S Y S +G
Sbjct: 1495 ASSSGYESMRG 1505
>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
Length = 872
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = +1
Query: 145 TKTSQTVVSGQAEC*SLYAA---RASSPLLRGR-SCRMNYLHSERQSSMASRTERQHSRG 312
TK Q +VSG + + + +SP+ RGR +C H E + S T
Sbjct: 597 TKDGQVLVSGPRHVINKDGSIVIQKASPVDRGRYTCTARNSHGEDRVSSTLNTMDPVVPK 656
Query: 313 IRSSDSRRLVPPPERSRSTADQASNSTANT 402
I S D R + P RSR N TA T
Sbjct: 657 ILSPDDPRTIHPDHRSRVHGTIGDNITALT 686
>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 232 RSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPIT 411
+S +++YL ++ S+ ERQ +R + V P ++ T+ +SNS A T
Sbjct: 429 QSEKLDYLRCNWVDTLQSKIERQETRYKGGRITHNFVSSPRQAAYTSGLSSNSIAQTITV 488
Query: 412 N 414
N
Sbjct: 489 N 489
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/88 (25%), Positives = 36/88 (40%)
Frame = +1
Query: 193 LYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTA 372
++ +S +RG S R++ R ER S G+R ++ T
Sbjct: 93 VWVPATNSQNIRGTSFLPPIESRSRKTGNVDRPERSLSAGVRDIPQKQSTESKNIPGPTN 152
Query: 373 DQASNSTANTPITNR*SHRYISSQGQAV 456
+S+S T TN S R I + GQ++
Sbjct: 153 SISSDSRRITKTTNSNSTRLIRTPGQSI 180
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +1
Query: 133 LDFITKTSQTVVSGQAEC*SLYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRG 312
L+ +TK S T + EC A R ++ LR + N L+++ + + T
Sbjct: 974 LEIVTKQSATEI----ECDPDVAMRLAT--LRSEASFENTLNNQANAGPSEETS------ 1021
Query: 313 IRSSDSRRLVPPPERSRSTADQASNSTANTP 405
S+ LVP P +++ T+D SNS P
Sbjct: 1022 --SNPKSYLVPAPRKAKPTSDDVSNSVGQRP 1050
>SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2)
Length = 803
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 133 LDFITKTSQTVVSGQAEC*SLYAARASS--PLLRGRSCRMNYLHSERQSSMASRTERQHS 306
LD I++ + V+ + RASS RS +N S + + + R
Sbjct: 642 LDSISEGKERVIGRSSSFNGRTPRRASSVDSPRNSRSRLLNASSSYERRTQEAGLNRASD 701
Query: 307 RGIRSSDSRRLVPPPERSRSTADQ 378
R +RS D +V PPE + DQ
Sbjct: 702 RRVRSLDRNEMVSPPELIQLLKDQ 725
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 256 HSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITNR*SHR 429
H E +S SRT+R+ SR S SR P RSRS D + +T +++R SH+
Sbjct: 486 HRESRSRSKSRTKRERSRKKSRSRSR----PRSRSRSRGDSLT-GFHSTSLSDR-SHK 537
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 268 QSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTP 405
+S MA+ + ++ S+DS+ P S+S AD S A+TP
Sbjct: 243 ESKMAADMKNSNAESSGSNDSKSTESPLSPSQSDADNTSPLKASTP 288
>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
Length = 260
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/48 (22%), Positives = 21/48 (43%)
Frame = +3
Query: 450 GRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 593
G ++S D + +W + + H F G IS++C + +N
Sbjct: 27 GSILSASRDRTTRVWVTEDGGRTYSEGHAFAGHKNFISSVCAMAPTEN 74
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Frame = +3
Query: 234 KLQNELFAFRKTVQHGFPHRASALAWDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYE 413
+L N F ++++ G R ++LA+ KV+ L T ++
Sbjct: 1248 RLWNPSDEFLRSLE-GHEDRVTSLAFSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGHD 1306
Query: 414 SIVTQIHFITGTGRLISLCDDN-SLHLWEINEKSLVELKSH 533
+ +++ C DN L +W++ KS LKSH
Sbjct: 1307 GYPVCCAWNPVDNTMVATCGDNLELLIWDLETKSSTRLKSH 1347
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 262 ERQSSMASRTE-RQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITN---R*SHR 429
+R+S SR+ R H + + S+SR P++SRS S + +P + R S R
Sbjct: 209 KRKSRSRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPRSSKR 268
Query: 430 YISSQ 444
Y SS+
Sbjct: 269 YRSSR 273
>SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 450 GRLISLCDDNSLHLWEINEKSLVELKS 530
G LIS C ++ +HLW + ++ V ++S
Sbjct: 1 GALISNCPEDCIHLWNLRQEQPVIVQS 27
>SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)
Length = 856
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 210 GPCRV*TSTFCLPRDDSLRSF 148
GPC+ T FC+ R D ++SF
Sbjct: 213 GPCQTPTLGFCVERHDQIQSF 233
>SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 428 LCDYRFVIGVLAVEFDAWSAVDLERS 351
LC+Y F++ F W A+D+ RS
Sbjct: 715 LCNYEFIMEAKMKPFRKWQALDMTRS 740
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,231,337
Number of Sequences: 59808
Number of extensions: 341958
Number of successful extensions: 1089
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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