BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11l15f (602 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_41539| Best HMM Match : PUD (HMM E-Value=0.42) 73 2e-13 SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) 32 0.41 SB_10606| Best HMM Match : I-set (HMM E-Value=0) 30 1.3 SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7 SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 29 2.2 SB_54| Best HMM Match : Actin (HMM E-Value=0) 29 2.2 SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2) 29 3.8 SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 29 3.8 SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1 SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) 28 5.1 SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1 SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 28 6.7 SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0) 27 8.8 SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 >SB_41539| Best HMM Match : PUD (HMM E-Value=0.42) Length = 1582 Score = 72.9 bits (171), Expect = 2e-13 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 7/86 (8%) Frame = +3 Query: 366 YGRPGVELYGQHTNYESIVTQIHFITGTGRLISLCDD---NSLHLWEINEKS----LVEL 524 +GRPGV+L H N ++ + ++HF+ GR+IS+CDD NS+HLWE+N+K L E+ Sbjct: 430 FGRPGVQLTACHDN-QTRIQELHFLPEQGRVISVCDDGEQNSIHLWEVNKKDGKSVLEEV 488 Query: 525 KSHVFEGKNKKISAICVESSAKNALL 602 K+ EG+ KKIS C+ LL Sbjct: 489 KTCTLEGRLKKISVCCLSMKTNRLLL 514 >SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) Length = 1671 Score = 31.9 bits (69), Expect = 0.41 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 235 SCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITN 414 SC + +R S ++ R +S G S S P P +SR+ + + S S A+T Sbjct: 1435 SCNSVHASRDRGSCLSVRDRNSYSSGHASDSSFSESPGPRQSRNRSLKRSKSAASTRSET 1494 Query: 415 R*SHRYISSQG 447 S Y S +G Sbjct: 1495 ASSSGYESMRG 1505 >SB_10606| Best HMM Match : I-set (HMM E-Value=0) Length = 872 Score = 30.3 bits (65), Expect = 1.3 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Frame = +1 Query: 145 TKTSQTVVSGQAEC*SLYAA---RASSPLLRGR-SCRMNYLHSERQSSMASRTERQHSRG 312 TK Q +VSG + + + +SP+ RGR +C H E + S T Sbjct: 597 TKDGQVLVSGPRHVINKDGSIVIQKASPVDRGRYTCTARNSHGEDRVSSTLNTMDPVVPK 656 Query: 313 IRSSDSRRLVPPPERSRSTADQASNSTANT 402 I S D R + P RSR N TA T Sbjct: 657 ILSPDDPRTIHPDHRSRVHGTIGDNITALT 686 >SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 884 Score = 29.9 bits (64), Expect = 1.7 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +1 Query: 232 RSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPIT 411 +S +++YL ++ S+ ERQ +R + V P ++ T+ +SNS A T Sbjct: 429 QSEKLDYLRCNWVDTLQSKIERQETRYKGGRITHNFVSSPRQAAYTSGLSSNSIAQTITV 488 Query: 412 N 414 N Sbjct: 489 N 489 >SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) Length = 429 Score = 29.5 bits (63), Expect = 2.2 Identities = 22/88 (25%), Positives = 36/88 (40%) Frame = +1 Query: 193 LYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTA 372 ++ +S +RG S R++ R ER S G+R ++ T Sbjct: 93 VWVPATNSQNIRGTSFLPPIESRSRKTGNVDRPERSLSAGVRDIPQKQSTESKNIPGPTN 152 Query: 373 DQASNSTANTPITNR*SHRYISSQGQAV 456 +S+S T TN S R I + GQ++ Sbjct: 153 SISSDSRRITKTTNSNSTRLIRTPGQSI 180 >SB_54| Best HMM Match : Actin (HMM E-Value=0) Length = 2486 Score = 29.5 bits (63), Expect = 2.2 Identities = 25/91 (27%), Positives = 41/91 (45%) Frame = +1 Query: 133 LDFITKTSQTVVSGQAEC*SLYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRG 312 L+ +TK S T + EC A R ++ LR + N L+++ + + T Sbjct: 974 LEIVTKQSATEI----ECDPDVAMRLAT--LRSEASFENTLNNQANAGPSEETS------ 1021 Query: 313 IRSSDSRRLVPPPERSRSTADQASNSTANTP 405 S+ LVP P +++ T+D SNS P Sbjct: 1022 --SNPKSYLVPAPRKAKPTSDDVSNSVGQRP 1050 >SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2) Length = 803 Score = 28.7 bits (61), Expect = 3.8 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Frame = +1 Query: 133 LDFITKTSQTVVSGQAEC*SLYAARASS--PLLRGRSCRMNYLHSERQSSMASRTERQHS 306 LD I++ + V+ + RASS RS +N S + + + R Sbjct: 642 LDSISEGKERVIGRSSSFNGRTPRRASSVDSPRNSRSRLLNASSSYERRTQEAGLNRASD 701 Query: 307 RGIRSSDSRRLVPPPERSRSTADQ 378 R +RS D +V PPE + DQ Sbjct: 702 RRVRSLDRNEMVSPPELIQLLKDQ 725 >SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) Length = 761 Score = 28.7 bits (61), Expect = 3.8 Identities = 22/58 (37%), Positives = 31/58 (53%) Frame = +1 Query: 256 HSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITNR*SHR 429 H E +S SRT+R+ SR S SR P RSRS D + +T +++R SH+ Sbjct: 486 HRESRSRSKSRTKRERSRKKSRSRSR----PRSRSRSRGDSLT-GFHSTSLSDR-SHK 537 >SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 919 Score = 28.3 bits (60), Expect = 5.1 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +1 Query: 268 QSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTP 405 +S MA+ + ++ S+DS+ P S+S AD S A+TP Sbjct: 243 ESKMAADMKNSNAESSGSNDSKSTESPLSPSQSDADNTSPLKASTP 288 >SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) Length = 260 Score = 28.3 bits (60), Expect = 5.1 Identities = 11/48 (22%), Positives = 21/48 (43%) Frame = +3 Query: 450 GRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 593 G ++S D + +W + + H F G IS++C + +N Sbjct: 27 GSILSASRDRTTRVWVTEDGGRTYSEGHAFAGHKNFISSVCAMAPTEN 74 >SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1803 Score = 28.3 bits (60), Expect = 5.1 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Frame = +3 Query: 234 KLQNELFAFRKTVQHGFPHRASALAWDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYE 413 +L N F ++++ G R ++LA+ KV+ L T ++ Sbjct: 1248 RLWNPSDEFLRSLE-GHEDRVTSLAFSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGHD 1306 Query: 414 SIVTQIHFITGTGRLISLCDDN-SLHLWEINEKSLVELKSH 533 + +++ C DN L +W++ KS LKSH Sbjct: 1307 GYPVCCAWNPVDNTMVATCGDNLELLIWDLETKSSTRLKSH 1347 >SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) Length = 765 Score = 27.9 bits (59), Expect = 6.7 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Frame = +1 Query: 262 ERQSSMASRTE-RQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITN---R*SHR 429 +R+S SR+ R H + + S+SR P++SRS S + +P + R S R Sbjct: 209 KRKSRSRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPRSSKR 268 Query: 430 YISSQ 444 Y SS+ Sbjct: 269 YRSSR 273 >SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 132 Score = 27.5 bits (58), Expect = 8.8 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +3 Query: 450 GRLISLCDDNSLHLWEINEKSLVELKS 530 G LIS C ++ +HLW + ++ V ++S Sbjct: 1 GALISNCPEDCIHLWNLRQEQPVIVQS 27 >SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0) Length = 856 Score = 27.5 bits (58), Expect = 8.8 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -3 Query: 210 GPCRV*TSTFCLPRDDSLRSF 148 GPC+ T FC+ R D ++SF Sbjct: 213 GPCQTPTLGFCVERHDQIQSF 233 >SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 837 Score = 27.5 bits (58), Expect = 8.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -1 Query: 428 LCDYRFVIGVLAVEFDAWSAVDLERS 351 LC+Y F++ F W A+D+ RS Sbjct: 715 LCNYEFIMEAKMKPFRKWQALDMTRS 740 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,231,337 Number of Sequences: 59808 Number of extensions: 341958 Number of successful extensions: 1089 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 992 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1082 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1463691625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -