Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l15f
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 40 0.001
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 33 0.15
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 32 0.25
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 32 0.34
At5g56080.1 68418.m06997 nicotianamine synthase, putative simila... 31 0.78
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 31 0.78
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 31 0.78
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-... 29 1.8
At5g02600.2 68418.m00195 heavy-metal-associated domain-containin... 29 2.4
At5g02600.1 68418.m00196 heavy-metal-associated domain-containin... 29 2.4
At4g23730.1 68417.m03414 aldose 1-epimerase family protein simil... 29 2.4
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 29 2.4
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 3.1
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 3.1
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 3.1
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 3.1
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 3.1
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 29 3.1
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 29 3.1
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 28 4.1
At4g31570.1 68417.m04483 expressed protein 28 5.5
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 28 5.5
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 27 7.2
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co... 27 7.2
At5g52950.1 68418.m06570 expressed protein ; expression supporte... 27 9.6
At4g18570.1 68417.m02749 proline-rich family protein common fami... 27 9.6
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 27 9.6
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 27 9.6
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 27 9.6
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 27 9.6
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 381 VELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE-LKSH 533
++ Y H N + ++ +T R++S +DN +H+WE+N K L++ L+ H
Sbjct: 233 LKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGH 284
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 375 PGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE 521
P E + T +E+ ++ + F + ++S DD +L LW++ SL++
Sbjct: 59 PIAEPVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIK 107
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 381 VELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE-LKSH 533
+++Y HTN +T +T ++S +DN ++LW++ +++++ L+ H
Sbjct: 248 LKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGH 299
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +3
Query: 279 GFPHRASALAWDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYESIVTQIHFITGTGRL 458
G P AS LA+DP KV G +E + + + F+ G L
Sbjct: 42 GIPSTASLLAFDPIQCLLAVGTLDGRIKVIGGDNIEAI-LASPKQLPFKNLEFMQNQGFL 100
Query: 459 ISLCDDNSLHLWEIN 503
+S+ ++N + +W+++
Sbjct: 101 VSISNENEIQVWDLD 115
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/76 (19%), Positives = 36/76 (47%)
Frame = +3
Query: 363 VYGRPGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFE 542
++ RP ++ T + VT I F+ T +++ D ++ +W +E + H +
Sbjct: 248 LFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTSR-HTLK 306
Query: 543 GKNKKISAICVESSAK 590
+ ++ A+ V ++ K
Sbjct: 307 DHSAEVRAVTVHATNK 322
>At5g56080.1 68418.m06997 nicotianamine synthase, putative similar
to nicotianamine synthase [Lycopersicon
esculentum][GI:4753801], nicotianamine synthase 2
[Hordeum vulgare][GI:4894912]
Length = 320
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +3
Query: 381 VELYGQHTNYESIVTQIHFITGTGRLISLC--DDNSLHLWEINEKSLVELKSHVFE 542
++LY Q +N ES+ + T +L+S C D ++ + EI+++ + +++SH+ +
Sbjct: 13 MDLYNQISNLESLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHDEKVKDMRSHLIK 68
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 402 TNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVES 581
T +E + +I + +++S+ DD S +WEI+ + +V V G + ++ C+
Sbjct: 232 TGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEIDSQEVV---GPVLFGHSVRVWDCCISD 288
Query: 582 S 584
S
Sbjct: 289 S 289
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 402 TNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVES 581
T +E + +I + +++S+ DD S +WEI+ + +V V G + ++ C+
Sbjct: 232 TGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEIDSQEVV---GPVLFGHSVRVWDCCISD 288
Query: 582 S 584
S
Sbjct: 289 S 289
>At1g71980.1 68414.m08320 protease-associated zinc finger
(C3HC4-type RING finger) family protein identical to
ReMembR-H2 protein JR702 [Arabidopsis thaliana]
gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
protease-associated (PA) domain and Pfam domain,
PF00097: Zinc finger, C3HC4 type (RING finger);
identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
cds GI:6942148
Length = 448
Score = 29.5 bits (63), Expect = 1.8
Identities = 30/99 (30%), Positives = 46/99 (46%)
Frame = +1
Query: 190 SLYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRST 369
SL+++ SS LL G S + L + S A + + +SS +RR PP SRS+
Sbjct: 304 SLHSSVRSSALLIGPS--LGSLPTSISFSPAYASSSYIRQSFQSSSNRRS-PPISVSRSS 360
Query: 370 ADQASNSTANTPITNR*SHRYISSQGQAV*YHYATITAF 486
D + + +P ++ S YIS Y TI+ F
Sbjct: 361 VDLRQQAASPSPSPSQRS--YISHMASPQSLGYPTISPF 397
>At5g02600.2 68418.m00195 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 277 MASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITNR 417
+ R +H+ IR D RRL PPP + + + +S+ST +TP+ R
Sbjct: 32 LGGRAIDRHNPIIR--DGRRLTPPPSPNLNPS-SSSSSTYHTPLMTR 75
>At5g02600.1 68418.m00196 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 277 MASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITNR 417
+ R +H+ IR D RRL PPP + + + +S+ST +TP+ R
Sbjct: 32 LGGRAIDRHNPIIR--DGRRLTPPPSPNLNPS-SSSSSTYHTPLMTR 75
>At4g23730.1 68417.m03414 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
1-epimerase
Length = 306
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 600 VKRSSLTILRIWPISFYFYLRIHATL 523
+K S +RIWP SF F+LR+ L
Sbjct: 124 LKSSDEDTMRIWPYSFEFHLRVSLAL 149
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 211 SSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNS 390
SS RG+S H E S+A+ TE++ S G S+D +L+ P + D +
Sbjct: 589 SSSSRRGKSSENQVAHKEPSHSIAA-TEKRLSLGGGSADFSKLMTPLVGDKDKGDALRRN 647
Query: 391 TANTPITN 414
++ +T+
Sbjct: 648 LSDLSLTD 655
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +3
Query: 423 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 636 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 682
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +3
Query: 423 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 638 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 684
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +3
Query: 423 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 638 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 684
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +3
Query: 423 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 638 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 684
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +3
Query: 423 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 638 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 684
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Frame = +3
Query: 309 WDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYESIV---TQIHFITGTGRL--ISLCD 473
W P ++Y G E QH ++ V I F T +L I+ D
Sbjct: 425 WSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGD 484
Query: 474 DNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
D ++ +W+ + +K H FEG + ++C
Sbjct: 485 DKTIKVWD----AATGVKRHTFEGHEAPVYSVC 513
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Frame = +3
Query: 309 WDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYESIV---TQIHFITGTGRL--ISLCD 473
W P ++Y G E QH ++ V I F T +L I+ D
Sbjct: 425 WSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGD 484
Query: 474 DNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
D ++ +W+ + +K H FEG + ++C
Sbjct: 485 DKTIKVWD----AATGVKRHTFEGHEAPVYSVC 513
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 420 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
V + + TG + LI+ DD++ +W+ KS V+ EG +SA+C
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ----TLEGHTHNVSAVC 236
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +3
Query: 462 SLCDDNSLHLWEINEKSLVELKSHV 536
++ ++N++HL E NEK+ +EL +H+
Sbjct: 666 TMFEENNIHLREENEKAHLELSAHL 690
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 381 VELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLW 494
++LYG+ +E V + F + L+S DD + LW
Sbjct: 45 LDLYGKLNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLW 82
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 390 YGQHTNYESIVTQIHFI-TGTGRLISLCDDNSLHLWEINEK 509
+ Q+T ++ + F + + +S DD S+ LW INEK
Sbjct: 801 FSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKLWSINEK 841
>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
contains Pfam profile PF00566: TBC domain
Length = 771
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 259 SERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTA 396
+++ +S+AS E + S+G+ +DS ERS D +S+ T+
Sbjct: 156 AQKLNSLASTDETESSKGVCENDSEDEFYDAERSDPIQDGSSDGTS 201
>At5g52950.1 68418.m06570 expressed protein ; expression supported
by MPSS
Length = 945
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 162 CRLWAGRMLKFIRGKG--QQPSAERQKLQNEL 251
CR+WA + K +GK QQ +A+R+K Q +
Sbjct: 868 CRVWAPKQTKNSKGKADQQQRTAKRKKEQRSV 899
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +1
Query: 265 RQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTP 405
R S+ TE +RS R PPP+RS S D N P
Sbjct: 259 RSSNSEELTESSSLSTVRSRVPRVPKPPPKRSISLGDSTENRADPPP 305
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 420 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
V + + TG + LI+ DD++ +W+ KS V+ +G +SA+C
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ----TLDGHTHNVSAVC 236
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 420 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
V + + TG + LI+ DD++ +W+ KS V+ +G +SA+C
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ----TLDGHTHNVSAVC 236
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 420 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 572
V + + TG + LI+ DD++ +W+ KS V+ +G +SA+C
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ----TLDGHTHNVSAVC 236
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 384 ELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWE 497
E+ ++ + V I F+ R ++ DD SL +WE
Sbjct: 403 EVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 440
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,302
Number of Sequences: 28952
Number of extensions: 232581
Number of successful extensions: 803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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