Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l14r
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_20042| Best HMM Match : RYDR_ITPR (HMM E-Value=0)                   28   9.2  

>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 426 STDNNVSYFNKMPSNQ*LKTSTVINEVVDKLEYARAFIQRFPATFS-VISFINVDKFHRL 250
           ST N+V    K+   + LKT +  N+V+  L+  +    + P+T + VIS + +D+   L
Sbjct: 192 STSNDVISTLKLDLGRHLKTPSTSNDVISALKLDQGRHLKTPSTSNDVISALKLDQGRHL 251

Query: 249 K*SCFVNSRIS 217
           K     N  IS
Sbjct: 252 KTPSTSNDVIS 262


>SB_20042| Best HMM Match : RYDR_ITPR (HMM E-Value=0)
          Length = 340

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 126 LRNRFYDNSVCIFTVYIRLCSHIFHCTQ 43
           LR  F DNS   + V  R+  HI HC +
Sbjct: 280 LRYIFMDNSALCYEVTERVVQHIIHCIE 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,777,574
Number of Sequences: 59808
Number of extensions: 364783
Number of successful extensions: 715
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)