Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l14r
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 69  CSHIFHCTQYK 37
           C H F+CTQY+
Sbjct: 606 CWHCFNCTQYQ 616


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 256 MKFIYIDKRDHRKCSWKSL 312
           MK  +++KR+HR  S K +
Sbjct: 590 MKTYWLEKREHRSSSTKGI 608


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/32 (21%), Positives = 19/32 (59%)
 Frame = -1

Query: 538 LANNFKFIIILHTFRHNYHITKRQLYHEQLLN 443
           L+NN+ +    + + +NY+   ++L +  ++N
Sbjct: 88  LSNNYNYNNNYNNYNNNYNTNYKKLQYYNIIN 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,650
Number of Sequences: 438
Number of extensions: 3828
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)