Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l14f
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    30   0.27 
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    29   0.36 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.5  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    27   1.9  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   1.9  
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    27   2.6  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   7.8  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -1

Query: 164 TKVSTEFSVHRAPDTRVTAVIPP-----NVSCYGTP*TSSVSEGTNSQASVSNGSSTRT 3
           +  STE S H    T +T+++PP     N +    P T+S++  T    + S  ++T T
Sbjct: 50  SSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTT 108


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 340 NSSVGLNGSGSRSILGPDGSCKLTTFITLIG*ADPE 233
           N +VGL+ S   +ILGP+G+ K T    LIG   P+
Sbjct: 711 NVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIPQ 746


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP 72
           S+ ++ HR+ D++  + +PPNV    +P
Sbjct: 122 SSNYAHHRSADSQTKSALPPNVPASSSP 149


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 143 SVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQA 33
           ++H  P ++  +VIPPN S  G+   S   +  N  A
Sbjct: 327 TIHYTPSSKRISVIPPNTSNIGSRVVSRSGQNNNQPA 363


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 57  YAAGLRRAVTRHVWRDHRRYACVWCSVYT 143
           Y A LRR V +   + H RY C +C   T
Sbjct: 18  YGASLRRDVRKIEVQQHSRYQCPFCGRLT 46


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 103  ITAV--TRVSGALCT-LNSVLTFVMIMYVY*VVQFLFSTRILTTQPVPDQLSR 252
            ITAV  T +S    T  +SVLT V +++V  ++  L +  + T  P P+ L R
Sbjct: 948  ITAVFLTIISAVASTDQSSVLTAVQLLWVNLIMDTLAALALATDPPTPEVLKR 1000


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 57  YAAGLRRAVTRHVWRDHRRYACVWC 131
           Y A LRR V +   + H RY C +C
Sbjct: 18  YGASLRRDVRKIEVQQHSRYQCPFC 42


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 361 GRHRLLHRLVTPRRNCQPVFRQNQDYGPE 447
           G H + + L T +R C+ ++ QN D   E
Sbjct: 36  GTHSVKNALATRKRECRALYVQNADIHSE 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,943
Number of Sequences: 5004
Number of extensions: 42166
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)