Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l14f
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0724 + 20439312-20439523,20441282-20441345                       28   4.6  
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    27   8.0  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    27   8.0  

>08_02_0724 + 20439312-20439523,20441282-20441345
          Length = 91

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 299 YGAATATIQSNRTIMALPTTLGATASFTAW*HQGATASRSSARTKTMD 442
           Y   +A  +SN T + LPT    ++S T W  +   ASR +A  K  D
Sbjct: 14  YSTTSAVRRSNPTEVHLPTRSKPSSSSTTWSIEIIQASRYAAYQKMSD 61


>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 127 GALCTLNSVLTFVMIMYVY*VVQFLFSTRILTTQPVPDQLSRL 255
           GA C  NS+L  + +   + +  F     IL   PV DQL+RL
Sbjct: 133 GATCYANSILQCLYMNTSFRLGIFSLEPDILKMHPVLDQLARL 175


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 295 PVWSGYRYHSVQQNYYGVTHYPGRHRLLHRLVTPRRNCQPVFRQNQDYGPERMFLYF*NG 474
           P  SGY +    Q+      YPG+ RL+ +++  R N         + GPE   +Y   G
Sbjct: 378 PNRSGYNFFFQDQHRKLKPEYPGQDRLISKMIGERWN---------NLGPEDKAVYQEKG 428

Query: 475 VKENSIY 495
           V++ + Y
Sbjct: 429 VEDKARY 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,463
Number of Sequences: 37544
Number of extensions: 292814
Number of successful extensions: 824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)