Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l14f
(569 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13) 62 4e-10
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_4156| Best HMM Match : Ets (HMM E-Value=0) 50 1e-06
SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71) 29 2.7
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 29 3.5
SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_56719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23) 27 8.2
>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
Length = 233
Score = 61.7 bits (143), Expect = 4e-10
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +3
Query: 426 EPRLWTREDVSVFLKWCEREFDLPNFDMDLFQMNGKALCLLT 551
+PRLWTREDV+ +L+W + L N +D F+MNGKALCL+T
Sbjct: 163 DPRLWTREDVTSWLRWISEAYSLENVKLDRFEMNGKALCLMT 204
>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 51.6 bits (118), Expect = 4e-07
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +3
Query: 417 LPPEPRLWTREDVSVFLKWCEREFDLPNFDMDLFQMNGKALCLL 548
+PP+PRLW++ DV +LKW +++ + D F MNGK +C+L
Sbjct: 118 VPPDPRLWSKWDVLEWLKWATERYNVKDVAADKFLMNGKGICML 161
>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
Length = 516
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 417 LPPEPRLWTREDVSVFLKWCEREFDLPNFDMDLFQMNGKALCLLTKTD 560
+P +P WT+E V ++ W +EF L + D+D F ++G+ LC LT+ D
Sbjct: 161 VPADPLCWTKEHVRQWILWAIKEFSLKDIDIDRFNIDGRDLCRLTRDD 208
>SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 286 RLGPVWSGYRYHSVQQNYYGVTHYPGRH 369
RL P +R+H++Q NY + GRH
Sbjct: 43 RLPPTSDAFRFHAMQSNYVAKPIFRGRH 70
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 286 RLGPVWSGYRYHSVQQNYYGVTHYPGRH 369
RL P +R+H++Q NY + GRH
Sbjct: 260 RLPPTSDAFRFHAMQSNYVAKPIFRGRH 287
>SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)
Length = 696
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 429 VLAEDRLAVAPWCHQAVKEAVAPRVV 352
+L E VA WC Q +K+ +A R++
Sbjct: 260 ILTEKSHGVASWCEQLIKDMLASRII 285
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = +1
Query: 304 SGYRYHSVQQNYYGVTHYPGRHRLLHRL-VTPRRNCQ----PVFRQN--QDYGP 444
S R+ QQ G H PG+H + R P ++ Q PV RQ+ QDY P
Sbjct: 785 SPQRHEEGQQQLPGGNHSPGQHHMQQRREALPEQHRQGRPIPVMRQHPRQDYSP 838
>SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 72 RRAVTRHVWRDHRRYACVWCSVYTEFCANFCD 167
RR +H WR +YA W V T A CD
Sbjct: 55 RRIAIKHYWRKQSQYAS-WMCVLTPLLAVSCD 85
>SB_56719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 298 VWSGYRYHSVQQNY-YGVTHYPGRHRLLHRLVTPRRNCQPVFRQNQDY 438
VW R + N+ YG+ + G RLL + V RR P+F N Y
Sbjct: 4 VWVRTRPEEQKGNHTYGLPNRYGSTRLLRKAVKTRRPQAPIFPANMLY 51
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 281 TAVWAQYGAATATIQSNRTIMALPTTLGATASFTAW*HQGATASRSSARTKTM 439
TA ATAT + T A TT ATA+ T A AS ++A T T+
Sbjct: 688 TATATVTATATATATATATATAATTTATATATATVTATVTAAASATAAVTATV 740
>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
Length = 1084
Score = 27.5 bits (58), Expect = 8.2
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Frame = +3
Query: 165 DDNVRVLSCPVSVFNKDFDNATSSGSA*PINVMKVVSLQLPSGPSMERLP---LPFSPTE 335
++ VR+ + PV + D + + S N M + P G ME P LP S
Sbjct: 494 ENTVRIKTEPVERGHLDAPDRSEKYSN---NGMPASEHEPPGGRDMEAEPSSYLPSSSMR 550
Query: 336 XXXXXXXXXXXXXXXXXGDTKAQLPAGL---PPE-PRLWTREDVSVFLKWCEREFD 491
G T LP+GL PP PR T E V+ + C++EFD
Sbjct: 551 SHEGGAAALHPGTPSLPGTTV--LPSGLTPYPPSYPRNGTTEGVAFRCEQCQKEFD 604
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,120,681
Number of Sequences: 59808
Number of extensions: 338724
Number of successful extensions: 1310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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