Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l14f
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z47809-8|CAH10845.1|  968|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z36719-11|CAH04695.1|  968|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   9.5  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      27   9.5  
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.       27   9.5  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 133 LCTLNSVLTFVMIMYVY*VVQFLFST 210
           +C+LN+ +TF++I+Y+   + F F T
Sbjct: 1   MCSLNNQVTFILIIYIQ--ISFTFGT 24


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 63  AGLRRAVTRHVWRDHRRYAC 122
           AGLR A  +HVW    +Y C
Sbjct: 277 AGLREAGEKHVWPTRNQYGC 296


>Z47809-8|CAH10845.1|  968|Caenorhabditis elegans Hypothetical
           protein C06C3.1d protein.
          Length = 968

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSST 9
           S+  SV R+  T V+ +I P  S +      SVS  T + A+V+  SST
Sbjct: 570 SSTSSVTRSSSTPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSST 618


>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSST 9
           S+  SV R+  T V+ +I P  S +      SVS  T + A+V+  SST
Sbjct: 570 SSTSSVTRSSSTPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSST 618


>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSST 9
           S+  SV R+  T V+ +I P  S +      SVS  T + A+V+  SST
Sbjct: 573 SSTSSVTRSSSTPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSST 621


>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
           protein C06C3.1a protein.
          Length = 1016

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSST 9
           S+  SV R+  T V+ +I P  S +      SVS  T + A+V+  SST
Sbjct: 570 SSTSSVTRSSSTPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSST 618


>Z36719-11|CAH04695.1|  968|Caenorhabditis elegans Hypothetical
           protein C06C3.1d protein.
          Length = 968

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSST 9
           S+  SV R+  T V+ +I P  S +      SVS  T + A+V+  SST
Sbjct: 570 SSTSSVTRSSSTPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSST 618


>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSST 9
           S+  SV R+  T V+ +I P  S +      SVS  T + A+V+  SST
Sbjct: 570 SSTSSVTRSSSTPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSST 618


>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSST 9
           S+  SV R+  T V+ +I P  S +      SVS  T + A+V+  SST
Sbjct: 573 SSTSSVTRSSSTPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSST 621


>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
           protein C06C3.1a protein.
          Length = 1016

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSST 9
           S+  SV R+  T V+ +I P  S +      SVS  T + A+V+  SST
Sbjct: 570 SSTSSVTRSSSTPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSST 618


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 275 LTTAVWAQYGAATATIQSNRTIMALPTTLGATASFTAW*HQGATASRSSARTKTMDQR 448
           LTT         T T+Q++ T+   P+   AT + T       TA+ SS+ T    Q+
Sbjct: 366 LTTTTEVISDVPTTTVQTSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQK 423


>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
          Length = 1016

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 155 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSST 9
           S+  SV R+  T V+ +I P  S +      SVS  T + A+V+  SST
Sbjct: 570 SSTSSVTRSSSTPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSST 618


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 114 YACVWCSVYTEFCANFCDDNVRVLSCPVSVFNKDFDNATS 233
           YA V+C      CA+FC+D+ + ++C      KD D+  S
Sbjct: 37  YAMVYCRKTCGNCADFCEDS-KFITCSAE-RKKDCDDMLS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,265
Number of Sequences: 27780
Number of extensions: 244417
Number of successful extensions: 786
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)