Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l12r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    27   2.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    27   3.8  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.8  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    26   6.6  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    25   8.7  

>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 448 ITSPTINADNSCGNGWICE 392
           +  P I   N C NGW+CE
Sbjct: 60  VNDPQIGEINCCLNGWLCE 78


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 146 NRFSSAAVTRPGAGNNIAVCSGGETS-LKSLVHVP 247
           NRFS A+V   G+G+N +  +   +S  +S+V+ P
Sbjct: 258 NRFSFASVAETGSGSNFSRATSSRSSKTRSVVYEP 292


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 8   QISSLQIFASTVPVLQSRVSTPMDSNHH-VILVAAVDDTSATIA 136
           QI +  +FAS     Q +V  P  +NH  V+L   + +TS TI+
Sbjct: 337 QIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTIS 380


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 273 AWLPRQKAIWLLPLSHQLVRAPLPAVFLKTT 365
           AWL    A  L  LSH++   P+P+ F+ +T
Sbjct: 9   AWLHNNSAEHLRFLSHRIFIGPIPSNFIHST 39


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 620 QPERSWRWWKHLDIQAIP 567
           QP  SW +W+ +D++  P
Sbjct: 211 QPYHSWVYWRDVDVETAP 228


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 62  VSTPMDSNHHVILVAAVDDTSATI 133
           + T  DS  H+++VAA+D T  TI
Sbjct: 388 IETAKDSYGHLVVVAALDCTDDTI 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,164
Number of Sequences: 5004
Number of extensions: 70404
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)