Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l12r
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153... 33 0.18
02_04_0288 + 21607289-21608251 31 0.74
09_02_0611 + 11235977-11236180,11236453-11236495,11237171-112372... 30 2.3
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 30 2.3
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459... 29 3.9
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 29 5.2
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 29 5.2
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 29 5.2
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 29 5.2
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 28 6.9
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 28 6.9
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223 28 9.1
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037 28 9.1
>08_01_0181 +
1530623-1531626,1531723-1531902,1531998-1532177,
1532363-1532442,1532528-1532701,1533001-1533118,
1533223-1533301
Length = 604
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 98 LVAAVDDTSATIAAYYNRFSSAAVTRPGAGNNIAVCSGG 214
L+A ++DT A + Y R S+AA P G + V GG
Sbjct: 50 LLAKIEDTKAALTVIYARCSAAAAHGPPGGGGVGVGGGG 88
>02_04_0288 + 21607289-21608251
Length = 320
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2
Query: 529 PYGYPQLMSSFAFTDTEAGPPMNSRGDITSPTINADNSCGNGWICEHRWRQIHNMVVFRN 350
P GY +++ + + A P + +RGD+ + D++ GN IC H H+ R
Sbjct: 124 PAGYDDCLAALRWVLSAADPWVAARGDLDRVFLAGDSAGGN--ICHHLAMHHHHDAPPRR 181
Query: 349 TAGNGALTNWWDNGSNQI 296
L + W GS +
Sbjct: 182 RLRGAVLIHPWFWGSEAV 199
>09_02_0611 +
11235977-11236180,11236453-11236495,11237171-11237241,
11237637-11237865,11238277-11238611
Length = 293
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 709 ENQLRWLVNXGPQWGLLASGDALTFIDNHDNQRGHGAGGNILTY 578
E ++ WL + WG F++NH+ Q G GG + Y
Sbjct: 51 EAEVAWLCSACRSWGFF---QIYNFLENHEQQLGAFRGGEVFLY 91
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 108 RWMIRARPSLPTTIDFPVQRLPDLAPEIISQ 200
RW+ R P LP+ DF +++ P + +ISQ
Sbjct: 1280 RWLTRTLPHLPSLEDFELRKCPQIKFLLISQ 1310
>06_03_1034 -
27044892-27044983,27045189-27045216,27045514-27045908,
27046224-27046312,27046352-27046620,27047037-27047270
Length = 368
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 32 ASTVPVLQSRVSTPMDSNHHVILVAAVDDTSATIAAYYNRFSSAAVTRPGAGNNIAVCSG 211
A T P L + ++ V+LVA V IAA +A ++R AG +AV +G
Sbjct: 8 AETPPTLLEYMGQAGAADDLVVLVAHVQSACKRIAALVASPGNAELSRGKAGGGVAVAAG 67
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 6 FRFPVFKYLPVRFPFYNLESAPLWIATIMSYSLLRWMIRARPSLPTTIDF 155
F+FP +L + LE L ++ L WMIR+ P DF
Sbjct: 78 FKFPCSTFLVEVLKLFKLEFPQLTPNALVRIGLFEWMIRSCGGTPRAEDF 127
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 6 FRFPVFKYLPVRFPFYNLESAPLWIATIMSYSLLRWMIRARPSLPTTIDF 155
F+FP +L + LE L ++ L WMIR+ P DF
Sbjct: 78 FKFPCSTFLVEVLKLFRLEFPQLTPNALVRIGLFEWMIRSCGGTPRAEDF 127
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 6 FRFPVFKYLPVRFPFYNLESAPLWIATIMSYSLLRWMIRARPSLPTTIDF 155
F+FP +L + LE L ++ L WMIR+ P DF
Sbjct: 78 FKFPCSTFLVEVLKLFKLEFPQLTPNALVRIGLFEWMIRSCGGTPRAEDF 127
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 6 FRFPVFKYLPVRFPFYNLESAPLWIATIMSYSLLRWMIRARPSLPTTIDF 155
F+FP +L + LE L ++ L WMIR+ P DF
Sbjct: 78 FKFPCSTFLVEVLKLFKLEFPQLTPNALVRIGLFEWMIRSCGGTPRAEDF 127
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 147 IDFPVQRLPDLAPEIISQYVPAGRQV*RVWSMSHASLLKAMKAWLPRQKAIWLLPLSHQL 326
+D L P++ SQ++ ++SH SL + + + + +L LS
Sbjct: 414 VDLSQNNLTGTIPDVSSQFLRLN-----YLNLSHNSLADTIPEAVVQYPKLTVLDLSSNQ 468
Query: 327 VRAPLPAVFLKTTML 371
R P+PA L ++ML
Sbjct: 469 FRGPIPANLLTSSML 483
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 6 FRFPVFKYLPVRFPFYNLESAPLWIATIMSYSLLRWMIRARPSLPTTIDF 155
F+FP +L + LE L ++ L WM+R+ P DF
Sbjct: 66 FKFPCSTFLVEVLKLFKLEFPQLTPNALVRIGLFEWMVRSCGETPQAEDF 115
>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
Length = 437
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 646 ALTFIDNHDNQRGHGAGGNILTYKQSRQYKGAIAFMLAHPYGYPQLMSSFAF 491
A+TFIDNHD G+ N + + +G A++L HP G P + F
Sbjct: 305 AVTFIDNHDT----GSTQNSWPFPSDKVMQG-YAYILTHP-GVPCIFYDHVF 350
>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
Length = 438
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 646 ALTFIDNHDNQRGHGAGGNILTYKQSRQYKGAIAFMLAHPYGYPQLMSSFAF 491
A+TFIDNHD G+ N + + +G A++L HP G P + F
Sbjct: 305 AVTFIDNHDT----GSTQNSWPFPSDKVMQG-YAYILTHP-GVPCIFYDHVF 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,439,821
Number of Sequences: 37544
Number of extensions: 560857
Number of successful extensions: 1542
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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