Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l12r
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    35   0.081
SB_15237| Best HMM Match : NHL (HMM E-Value=0)                         32   0.43 
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   30   2.3  
SB_46284| Best HMM Match : RVT_1 (HMM E-Value=0.48)                    28   7.0  
SB_46862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   9.3  

>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = -2

Query: 421  NSCGNGWICEHRWRQIHNMVVFRNTAGNGALTNWW-DNGSNQIAFCRGNQAFIAFNNDAW 245
            N C +G +CE     +H+ V +      G    W+ DN    +  C+G+  F   N    
Sbjct: 2555 NPCMHGGVCE-----LHSSVRYTCLCPQG----WYGDNCQFNLNECKGDPCFN--NGTCQ 2603

Query: 244  DMDQTLQ-TCLPAGT--YCDIISGARSGNRCTGKSIVVGSD 131
            D + T Q TC P  T   C++  GA + + CT   + V S+
Sbjct: 2604 DRNGTYQCTCRPGSTGKQCELTEGACAKSNCTADELCVLSE 2644


>SB_15237| Best HMM Match : NHL (HMM E-Value=0)
          Length = 997

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
 Frame = -2

Query: 481  EAGPPMNSRGDITSPTINADNSCGNGWICEHRWRQIHNMVVFRNTAGNGALTNWWDNGSN 302
            E G     +GD + P  +A+NS G  ++ +   RQ + + VF    G       + +G  
Sbjct: 717  EIGAKGQGQGDFSGPWCSAENSAGEIFVTD---RQNNRLQVFTPDGGFLRTIGEFGSGKG 773

Query: 301  QIAFCRGNQAFIAFNNDAWDMD---QTLQTCLPAGTYCDIISGARSGNRCTGKSIVVGSD 131
            Q+   RG    ++ N+D    D     +Q    +G++  + SGA S      K   V  D
Sbjct: 774  QLIEPRG--VVVSANDDVIVSDTGNHRIQVFAKSGSFKFMFSGAGSREGYLRKPYGVAVD 831

Query: 130  GRARII 113
                II
Sbjct: 832  NDQNII 837


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 59  EIVKREPYWQIFEDWKS 9
           ++VKRE Y QI EDW+S
Sbjct: 761 DLVKREEYQQILEDWRS 777


>SB_46284| Best HMM Match : RVT_1 (HMM E-Value=0.48)
          Length = 549

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 252 SLLKAMKAWLPRQKAIWLLPLSHQLVRAPLPAVFLKTTMLWI*RQRC--SHIQPLPQELS 425
           S L A KA  P     WLL  +  L+ AP+ A+F  +       + C  + I PL ++  
Sbjct: 233 SALNAKKASGPDSIPAWLLKDNADLIAAPVAAIFNSSFRECQLPKSCKRADITPLSKQTP 292

Query: 426 ALIVGEVISPLLFI 467
            L V + + P+  I
Sbjct: 293 ILDVNKHLRPISLI 306


>SB_46862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 422 ISVDSRRGDITPAVHWRSSFGVREGETTHQLRVAIRMCQHESDSALVLSGLLVCQDVSTS 601
           + VDSR     P   WR+S   R    + QLR            AL  +G++V + V+ +
Sbjct: 54  LQVDSRGSPHPPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSVTAT 113


>SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 184 GARSGNRCTGKSIVVGSDGRARIIHRSNE 98
           GA+SG    G+ +V  +DG   I HRS++
Sbjct: 767 GAQSGCHVKGRVLVALADGTVAIFHRSSD 795


>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1846

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = -2

Query: 286 RGNQAFIAFNNDAWDMDQTLQTCLPAGTYCDIISGARSGNRCT--GKSIVVGSDGRARII 113
           R  Q F    +   D++ TLQ  + +  Y D   G  S + CT     + +GS     +I
Sbjct: 664 RPTQVFYPVYDSTTDVNYTLQISMASCVYWDHAQGTWSSDGCTRMAMPVEIGSSVPRALI 723

Query: 112 HRSNEYDMMVAIHRGADSRL*NGNRT 35
            R      +  + +  DS     NR+
Sbjct: 724 ARLMMTGFLRYVFKSTDSVFSGPNRS 749


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,880,413
Number of Sequences: 59808
Number of extensions: 600331
Number of successful extensions: 1493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)