Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l12r
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical pr...   155   3e-38
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    30   2.0  
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    28   6.2  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical pr...    28   8.1  
S56051-1|AAB25489.2|  147|Caenorhabditis elegans ubiquitin-conju...    28   8.1  
L23651-1|AAA27964.3|  610|Caenorhabditis elegans Temporarily ass...    28   8.1  

>Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical
           protein C50B6.7 protein.
          Length = 713

 Score =  155 bits (376), Expect = 3e-38
 Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 7/216 (3%)
 Frame = -2

Query: 727 SSXSKEENQLRWLVNXGPQWGL--LASGDALTFIDNHDNQRGHGAGGNILTYKQSRQYKG 554
           S+ +K+++  ++L N GP +G       D L FIDNHDNQR   +   ++TYK  ++Y  
Sbjct: 289 SAAAKQQSDWKYLANLGPGYGYGNNEDHDVLNFIDNHDNQRD--SSPYVVTYKDGQKYNL 346

Query: 553 AIAFMLAHPYGYPQLMSSFAFTDTEAGPPMNSRGD---ITSPTINADNSC--GNGWICEH 389
           A+ FMLA PYGYP++MSSFAF+ ++  PP +   +    TSPT N D +C   +GW+CEH
Sbjct: 347 AVGFMLAWPYGYPRVMSSFAFSYSDQSPPNSGASNDYATTSPTFNGDQTCNSNSGWVCEH 406

Query: 388 RWRQIHNMVVFRNTAGNGALTNWWDNGSNQIAFCRGNQAFIAFNNDAWDMDQTLQTCLPA 209
           RW  I  M  FR+     A  +   + + +IAF R  + F A N       +   T LPA
Sbjct: 407 RWPAIRQMAKFRSAVQGTAAADIVTD-TRRIAFARDGKGFFALNQQDGAWTKIFATNLPA 465

Query: 208 GTYCDIISGARSGNRCTGKSIVVGSDGRARIIHRSN 101
           G YCD  SG     +C G  I V  D  + +   SN
Sbjct: 466 GDYCDHFSGGLDNGKCVGTKITVRDDHTSYLSVPSN 501


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 469 PMNSRGDITSPTINADNSCGNGWICEHR 386
           PM S G I S      NSC  G+ICE R
Sbjct: 641 PMCSSGSIASSVCGMANSCPIGYICEGR 668


>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical protein
            ZK688.5b protein.
          Length = 1595

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 529  PYGYPQLMSSFAFTDTEAGPPMNSRGDITSPT 434
            P G+P +M+S     T AGPP      + SPT
Sbjct: 924  PAGFPLMMASSNVPSTSAGPPGWPIRQVVSPT 955


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical protein
            ZK688.5a protein.
          Length = 1620

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 529  PYGYPQLMSSFAFTDTEAGPPMNSRGDITSPT 434
            P G+P +M+S     T AGPP      + SPT
Sbjct: 924  PAGFPLMMASSNVPSTSAGPPGWPIRQVVSPT 955


>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 244 PMHRC*KQ*RPGCRGRKQSGCYRCPT 321
           P+  C K   PGC+  ++  CY C T
Sbjct: 338 PIENCVKSTCPGCKSNRKYFCYDCRT 363


>Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical
           protein M7.1 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 562 YKGAIAFMLAH-PYGYPQLMSSFAFTDTEAGPPMNSRGDI 446
           Y+G + F+  H P  YP      AFT     P +NS G I
Sbjct: 45  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84


>S56051-1|AAB25489.2|  147|Caenorhabditis elegans
           ubiquitin-conjugating enzyme protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 562 YKGAIAFMLAH-PYGYPQLMSSFAFTDTEAGPPMNSRGDI 446
           Y+G + F+  H P  YP      AFT     P +NS G I
Sbjct: 45  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84


>L23651-1|AAA27964.3|  610|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 250, isoform a protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 629 QPRQPERSWRWWKHLDIQAIPTIQGR 552
           +P QP   W  WK L+  A+PT + R
Sbjct: 539 EPTQP--GWSQWKQLNAPAVPTCEAR 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,178
Number of Sequences: 27780
Number of extensions: 425685
Number of successful extensions: 1037
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)