Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l12r
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.           267   7e-74
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.19 

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score =  267 bits (655), Expect = 7e-74
 Identities = 121/218 (55%), Positives = 151/218 (69%)
 Frame = -2

Query: 727 SSXSKEENQLRWLVNXGPQWGLLASGDALTFIDNHDNQRGHGAGGNILTYKQSRQYKGAI 548
           S+  +  N L+WLVN G QWG L S D+L F+DNHD QR +     ILTYK S++YK A+
Sbjct: 274 SNAFRGNNNLKWLVNWGEQWGFLPSKDSLVFVDNHDTQRDNP---QILTYKYSKRYKMAV 330

Query: 547 AFMLAHPYGYPQLMSSFAFTDTEAGPPMNSRGDITSPTINADNSCGNGWICEHRWRQIHN 368
           AFML+HP+G P++MSSF F   + GPP +  G+I SP+I+ DN C NGWICEHRWRQI+N
Sbjct: 331 AFMLSHPFGTPRIMSSFDFQSKDQGPPNDGNGNILSPSIH-DNICSNGWICEHRWRQIYN 389

Query: 367 MVVFRNTAGNGALTNWWDNGSNQIAFCRGNQAFIAFNNDAWDMDQTLQTCLPAGTYCDII 188
           MV FRN      + NWWDNGSNQIAF RG   F+AFN D +D+ + L+ CLP G YCD+I
Sbjct: 390 MVRFRNLVKGTKIDNWWDNGSNQIAFSRGCSGFVAFNGDQYDLKKNLKVCLPPGQYCDVI 449

Query: 187 SGARSGNRCTGKSIVVGSDGRARIIHRSNEYDMMVAIH 74
           SG     RCTGK + VGSDG A I   + E D ++AIH
Sbjct: 450 SGNLEKGRCTGKIVTVGSDGNANIEIGAGEEDGVLAIH 487


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 629 QPRQPERSWRWWKHLDIQAIPTIQGRYRF---HVGTSLWLPSI 510
           QP+QP + +  WK +      T+Q R      H+  + W+PSI
Sbjct: 438 QPKQPIKLFEQWKSILESGTTTLQTRTMHPYDHLVWNSWMPSI 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,652
Number of Sequences: 438
Number of extensions: 5323
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)