Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l12r
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03010.1 68418.m00247 kelch repeat-containing protein contain...    30   1.4  
At1g76920.1 68414.m08954 F-box family protein (FBX3) contains si...    30   1.4  
At3g23630.1 68416.m02972 adenylate isopentenyltransferase 7 / cy...    30   1.9  
At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase...    29   4.4  
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r...    28   5.8  
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    28   5.8  
At3g19440.1 68416.m02465 pseudouridine synthase family protein l...    28   7.6  
At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit...    28   7.6  

>At5g03010.1 68418.m00247 kelch repeat-containing protein contains
           Pfam PF01344: Kelch motif (1 repeat)
          Length = 232

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 373 HNMVVFRNTAGNGALTNWWDNGSNQIAFCRGNQAFIAFNN 254
           + +V   N AG G +T WW +G   +    G + +  + N
Sbjct: 146 YQLVSVANAAGGGRVTVWWKSGLKVLDLLSGTETWECYTN 185


>At1g76920.1 68414.m08954 F-box family protein (FBX3) contains
           similarity to stamina pistilloidia GI:4101570, the pea
           ortholog of Fim and UFO from [Pisum sativum]
          Length = 374

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -2

Query: 517 PQLMSSFAFTDTEAGPPMNSRGDITSPTINADNSCGNGWIC--EHRWRQIHNMVVF-RNT 347
           P LMSS  F   + G P  S+  + S  +         W+C  +H W  I +++   R  
Sbjct: 201 PVLMSSSVFALCDVGSPWRSQWKLFSCKLTNLTITHTNWVCLEKHEWGDIFDIIKRPRLL 260

Query: 346 AGNG 335
            GNG
Sbjct: 261 RGNG 264


>At3g23630.1 68416.m02972 adenylate isopentenyltransferase 7 /
           cytokinin synthase (IPT7) identical to adenylate
           isopentenyltransferase (IPT7) [Arabidopsis thaliana]
           GI:14279066
          Length = 329

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 86  HHVILVAAVDDTSATIAAYYNRFSSAAVTRPGAGNNIAVCSGGETS-LKSLVH 241
           HH++ V   +  + T A  Y+R +S A+++  A N + + +GG  S +++LV+
Sbjct: 91  HHLLGVFDSEAGNLT-ATQYSRLASQAISKLSANNKLPIVAGGSNSYIEALVN 142


>At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 4 [Lycopersicon
           esculentum] GI:2459815; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 394

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
 Frame = -2

Query: 385 WRQIHNMVVFRNTAGNGALTNWWDNGSN--QIAFCRGNQAFIAFNNDAWDMDQTLQTCLP 212
           W    N++ F+N     A  N+WD G++   I F + N+  + +            +C  
Sbjct: 81  WGPCKNIITFKNDGTLVAPANYWDIGNSGYWILFAKVNRISV-YGGTIDARGAGYWSCRK 139

Query: 211 AGTYCDIISGARSGNRCTGKSIVVGSDGRARIIHRSNEYDMMVAIHRGADSRL*N 47
            G++C    GARS +     ++++        +   N  +M V +H  ++ R+ N
Sbjct: 140 KGSHCP--QGARSISFSWCNNVLLSG------LSSFNSQNMHVTVHHSSNVRIEN 186


>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1568

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = -2

Query: 124 ARIIHRSNEYDMMVAI-HRGADSRL*NGNRTGKYLKTGNLK 5
           AR++ + +E + + A+ ++G+D+ L +G R+G+  K GN +
Sbjct: 235 ARLLQQKSECENVGAVDNKGSDATLGSGKRSGERRKHGNAR 275


>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 646 ALTFIDNHDNQRGHGAGGNILTYKQSRQYKGAIAFMLAHPYGYPQLMSSFAFTD 485
           A+TFI+NHD     G+      + + ++ +G  A++L HP G P +     F+D
Sbjct: 766 AVTFIENHDT----GSTQGHWRFPEGKEMQG-YAYILTHP-GTPAVFFDHIFSD 813


>At3g19440.1 68416.m02465 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 477

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 105 LRWMIRARPSLPTTIDFPVQRLPDLAPEI 191
           LRW++R RP LP T+   + RL  +  E+
Sbjct: 93  LRWILRCRPDLPRTLVQKLFRLRQVRREM 121


>At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit,
           putative similar to SP|P39007 Oligosaccharyl transferase
           STT3 subunit {Saccharomyces cerevisiae}; contains Pfam
           profile PF02516: Oligosaccharyl transferase STT3 subunit
          Length = 735

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 355 RNTAGNGALTNWWDNGSNQIAFCRGNQAFIAFNNDAWD 242
           +NTA +  + +WWD G    A   GN+  I  NN  W+
Sbjct: 551 QNTATDAKIMSWWDYGYQITAM--GNRTVIVDNN-TWN 585


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,104
Number of Sequences: 28952
Number of extensions: 404514
Number of successful extensions: 973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)