Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l12f
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7) 30 1.6
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 30 1.6
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_48326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2) 29 2.1
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) 29 2.1
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8) 29 2.8
SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_26246| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_42912| Best HMM Match : K_tetra (HMM E-Value=7.20267e-43) 28 4.9
SB_19910| Best HMM Match : C1_4 (HMM E-Value=3.2) 28 4.9
SB_49270| Best HMM Match : RVT_1 (HMM E-Value=1.4) 27 8.5
>SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)
Length = 306
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRC 361
+R+LG RGF VS + N VI+S N P E Y+ Y + N M+ RC
Sbjct: 154 QRYLGERGFELNVVSREHANTVIYSGNLPAPE-YRLYLYYVKGHFDYINSMPGMLGRC 210
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRC 361
+R+LG RGF VS + N VI+S N P E Y+ Y N M+ RC
Sbjct: 339 QRYLGARGFELNVVSREHANTVIYSGNLPAPE-YRLYLYHAKGHFDYINSMPGMLGRC 395
>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2337
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVT 316
+R+LG RGF VS + N VI+S N P E +P + +++
Sbjct: 111 QRYLGERGFEINVVSREHANTVIYSGNLPAPEYREPRNISIIS 153
>SB_48326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 301 GDWLIALPPRTVAGPDYQILVWWRNLNTTESSGS 200
GDW + L RT PDY + N T SS +
Sbjct: 40 GDWWVGLGQRTSMAPDYGFFATKSSTNDTSSSSN 73
>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
Length = 1056
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRC 361
+R+LG RGF VS + N VI+S N P E Y+ Y N M+ RC
Sbjct: 5 QRYLGERGFELNVVSREHANTVIYSGNLPAPE-YRLYLYYAKDHFDYINSMPGMLGRC 61
>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
Length = 925
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRC 361
+R+LG RGF VS + N VI+S N P E Y+ Y N M+ RC
Sbjct: 53 QRYLGERGFELNVVSRQHANTVIYSGNLPAPE-YRLYLYYAKDHFDYINSIPGMLGRC 109
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +2
Query: 167 DDIAAECERFLGPRGFGGIQVSPPNENLVIWSRNRPWWE---RYQPISYRLVTRSGNENQ 337
DD + E L G+ +SPPN N S+ W + + P + R TRS +Q
Sbjct: 344 DDTSVESSNLLSTNQTSGVGMSPPNTNNSKTSKMNDWLQFRPQTSPRTTRPRTRSTTSSQ 403
Query: 338 FSNMVRRCNNVGVRIYVDAIINHMTGTW 421
+ + +R Y D I++H+ T+
Sbjct: 404 -ALLDGTSYQSALRHYED-IVSHLFNTF 429
>SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8)
Length = 406
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRC 361
+R+LG RGF VS + N VI+S N P E Y+ Y N M+ RC
Sbjct: 262 QRYLGERGFELNVVSREHANTVIYSGNLPAPE-YRLYLYYAKGHFDYINSMPGMLGRC 318
>SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 122 ASGRTTMVHLFEWKWDDIAAECERFLGPRGFGGIQVSPPNENLVIWSRN 268
+SG + + K ++ + F+ RGFGG++ PP + + I + N
Sbjct: 137 SSGSDAATPIKDPKTGEVKDKVTAFIVERGFGGVESGPPEKKMGIKASN 185
>SB_26246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRC 361
+R+LG RGF VS + N VI+S N P E Y+ Y N M+ RC
Sbjct: 95 QRYLGERGFELNVVSREHANTVIYSGNLPAPE-YRLYLYYAKGHFDYINSMPGMLGRC 151
>SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRC 361
+R+LG RGF VS + N VI+S N P E Y Y N M+ RC
Sbjct: 271 QRYLGERGFELNVVSREHANTVIYSGNLPAPE-YLLYLYHAKGHFDYINSMPGMLGRC 327
>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRN 268
+R+LG RGFG VS N VI+S N
Sbjct: 211 QRYLGERGFGVNVVSREQANTVIYSGN 237
>SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 167 DDIAAECERFLGPRGFGGIQVSPPNENLVIWSRNRPWWE---RYQPISYRLVTRSGNENQ 337
DD + E L G+ +SPPN N S+ W + + P + R TRS +Q
Sbjct: 216 DDTSVESSNLLSTNQTSGVGMSPPNTNNSKTSKMNDWLQFRPQTSPRTTRPRTRSTTSSQ 275
>SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +3
Query: 108 KTLTMHRVAPPWYISSNGSGMTSLLNAKGSLDPEDSVVFRFRHQTRIW*SGPATVLGGSA 287
KT+ +H + + + S L + KGSL HQ +W + +T LGG
Sbjct: 275 KTIHLHLLIWGLSVFESQSSKNHLPHPKGSLFGSLEDYDVLVHQVPLWEARLSTALGGLR 334
Query: 288 INQSPT 305
I+ SP+
Sbjct: 335 IHNSPS 340
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 388 HINPDANIVAATHHIRKLIFISRSCY*TVGDWLIALPPRTVAG 260
HIN I T I K +FIS+S VG W+ TV+G
Sbjct: 2228 HINAQGTITHKTTTIAKGLFISQSTL-VVGQWIPGSMDGTVSG 2269
>SB_42912| Best HMM Match : K_tetra (HMM E-Value=7.20267e-43)
Length = 523
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 254 IWSRNRPWWERYQP 295
I RNR WW++YQP
Sbjct: 421 IRQRNRTWWKKYQP 434
>SB_19910| Best HMM Match : C1_4 (HMM E-Value=3.2)
Length = 201
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 188 ERFLGPRGFGGIQVSPPNENLVIWSRN 268
+R+LG RGFG VS N VI+S N
Sbjct: 27 QRYLGERGFGVNVVSREQVNTVIYSGN 53
>SB_49270| Best HMM Match : RVT_1 (HMM E-Value=1.4)
Length = 594
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 226 LNTTESSGSKEPFAFSSDVIPLPFEEM 146
LNT +S SKE + F S P P EE+
Sbjct: 135 LNTDTASTSKETYGFRSTKNPPPIEEL 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,079,632
Number of Sequences: 59808
Number of extensions: 512402
Number of successful extensions: 1502
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -