Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l12f
(585 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g... 37 0.011
At1g76130.1 68414.m08841 alpha-amylase, putative / 1,4-alpha-D-g... 35 0.046
At4g25000.1 68417.m03587 alpha-amylase, putative / 1,4-alpha-D-g... 34 0.061
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi... 32 0.24
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 32 0.24
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 32 0.24
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 28 4.0
At5g25910.1 68418.m03077 disease resistance family protein conta... 28 5.3
At5g44930.2 68418.m05510 exostosin family protein contains Pfam ... 27 7.0
At5g44930.1 68418.m05509 exostosin family protein contains Pfam ... 27 7.0
At1g17890.3 68414.m02214 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 27 7.0
At1g17890.2 68414.m02213 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 27 7.0
At1g17890.1 68414.m02215 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 27 7.0
At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3... 27 9.2
>At1g69830.1 68414.m08034 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative similar to
SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
(1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
alpha-amylase [Malus x domestica] GI:7532799; contains
Pfam profile PF00128: Alpha amylase, catalytic domain
Length = 887
Score = 36.7 bits (81), Expect = 0.011
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Frame = +2
Query: 197 LGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPIS-YRLVTRSGNENQFSNMVRRCNNVG 373
L GF + + PP E++ P E Y P Y L +R G ++ + V++ + VG
Sbjct: 523 LASLGFTVLWLPPPTESV------SP--EGYMPKDLYNLNSRYGTIDELKDTVKKFHKVG 574
Query: 374 VRIYVDAIINHMTGTWNENVGTGGSTADFGNWHYPAVPYGRNDFNWPHCVITGNDYNCCP 553
+++ DA++NH + G NW AV F +G++++ P
Sbjct: 575 IKVLGDAVLNHRCAHFKNQNGVWNLFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAP 634
Query: 554 D 556
+
Sbjct: 635 N 635
>At1g76130.1 68414.m08841 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative strong
similarity to alpha-amylase GI:7532799 from [Malus x
domestica];contains Pfam profile PF00128: Alpha amylase,
catalytic domain
Length = 413
Score = 34.7 bits (76), Expect = 0.046
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 146 HLFEWKWDDIAAECERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPIS-YRLVTRS 322
H ++W W ++ + + GF + PP+++L P E Y P Y L +
Sbjct: 37 HKYDW-WRNLDGKVPD-IAKSGFTSAWLPPPSQSLA------P--EGYLPQDLYSLNSAY 86
Query: 323 GNENQFSNMVRRCNNVGVRIYVDAIINHMTGT 418
G+E+ +++R+ VR D +INH GT
Sbjct: 87 GSEHLLKSLLRKMKQYKVRAMADIVINHRVGT 118
>At4g25000.1 68417.m03587 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative similar to
alpha-amylase from Vigna mungo SP|P17859, Ipomoea nil
GI:21670851; contains Pfam profile PF00128: Alpha
amylase, catalytic domain
Length = 423
Score = 34.3 bits (75), Expect = 0.061
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = +2
Query: 314 TRSGNENQFSNMVRRCNNVGVRIYVDAIINHMTGTWNEN-----VGTGGSTADFGNWHYP 478
++ G+E + ++++ N G++ D +INH T ++ GG++ D +W
Sbjct: 87 SKYGSEAELKSLIKALNQKGIKALADIVINHRTAERKDDKCGYCYFEGGTSDDRLDWDPS 146
Query: 479 AVPYGRNDFNWPHC--VITGNDYNCCPD 556
V RND +P + TG D++ PD
Sbjct: 147 FV--CRNDPKFPGTGNLDTGGDFDGAPD 172
>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
enzyme, putative similar to isoamylase from [Solanum
tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
[Hordeum vulgare] GI:21314275, [Oryza sativa]
GI:3252794; contains Pfam profiles PF00128: Alpha
amylase catalytic domain, PF02922: Isoamylase N-terminal
domain
Length = 783
Score = 32.3 bits (70), Expect = 0.24
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 332 NQFSNMVRRCNNVGVRIYVDAIINHMTGTWNENVGTGGSTADFGNWHYPAVPYGRNDFNW 511
N+F +V+ + G+ + +D ++NH T NE + +Y P G +N+
Sbjct: 316 NEFKILVKEAHKRGIEVIMDVVLNH-TAEGNEKGPIFSFRGVDNSVYYMLAPKG-EFYNY 373
Query: 512 PHCVITGNDYNC 547
C GN +NC
Sbjct: 374 SGC---GNTFNC 382
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 32.3 bits (70), Expect = 0.24
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -3
Query: 511 PVEVIPAVRNSRIVPVSEIGCASTCTNILIPSSSHVVDDGVHINPDANIVAAT 353
PV+V P V N +PVS I T ++ P+SS V +H NP+++ +A+
Sbjct: 53 PVDVNPRVNNPIPLPVSRIAGGVTSSSGGSPASSESVVSVLHNNPESSSGSAS 105
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 32.3 bits (70), Expect = 0.24
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -3
Query: 511 PVEVIPAVRNSRIVPVSEIGCASTCTNILIPSSSHVVDDGVHINPDANIVAAT 353
PV+V P V N +PVS I T ++ P+SS V +H NP+++ +A+
Sbjct: 53 PVDVNPRVNNPIPLPVSRIAGGVTSSSGGSPASSESVVSVLHNNPESSSGSAS 105
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 105 IKTLTMHRVAPPWYISSNGSG-MTSLLNAKGSLDPEDSV----VFRFRHQTRIW*SGPAT 269
+ T++ + A W IS NGSG + + LN GS D + +++ H + G +
Sbjct: 247 VLTVSADKSAKIWDISDNGSGSLNTTLNCPGSSGGVDDMLVGCLWQNDHIVTVSLGGTIS 306
Query: 270 VLGGSAINQSP 302
+ S +++SP
Sbjct: 307 IFSASDLDKSP 317
>At5g25910.1 68418.m03077 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-5D [Lycopersicon
esculentum] gi|3894393|gb|AAC78596;
Length = 811
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 302 YRLVTRSGNENQFSNMVRRC-NNVGVRIYVDAIINHMTGTWNENVGTGGSTADFGN 466
+ L+ + N+F+ + RC N+ ++ NH++G+ EN+ T + D G+
Sbjct: 442 HSLILLDLSTNKFNGSIPRCIANLSTLEVLNLGKNHLSGSIPENISTSVKSIDIGH 497
>At5g44930.2 68418.m05510 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 443
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 200 GPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRCNN 367
G GFG E+LV W ++ WW R + +V +G+ N ++ R N
Sbjct: 151 GRPGFG-YSDEEMQESLVSWLESQEWWRRNNGRDHVIV--AGDPNALKRVMDRVKN 203
>At5g44930.1 68418.m05509 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 443
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 200 GPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNENQFSNMVRRCNN 367
G GFG E+LV W ++ WW R + +V +G+ N ++ R N
Sbjct: 151 GRPGFG-YSDEEMQESLVSWLESQEWWRRNNGRDHVIV--AGDPNALKRVMDRVKN 203
>At1g17890.3 68414.m02214
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 320
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 394 GVHINPDANIV--AATHHIRKLIFISRSC 314
GV++ N++ A TH ++KL+F+ SC
Sbjct: 89 GVNLQIQTNVIHSAYTHGVKKLLFLGSSC 117
>At1g17890.2 68414.m02213
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 320
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 394 GVHINPDANIV--AATHHIRKLIFISRSC 314
GV++ N++ A TH ++KL+F+ SC
Sbjct: 89 GVNLQIQTNVIHSAYTHGVKKLLFLGSSC 117
>At1g17890.1 68414.m02215
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 328
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 394 GVHINPDANIV--AATHHIRKLIFISRSC 314
GV++ N++ A TH ++KL+F+ SC
Sbjct: 97 GVNLQIQTNVIHSAYTHGVKKLLFLGSSC 125
>At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3)
identical to transcription factor 3 (TCP3) [Arabidopsis
thaliana] (GI:3243274); similar to flower development
protein cycloidea (cyc3) GI:6358611 from [Misopates
orontium]
Length = 391
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 250 QILVWWRNLNTTESSGSKEPFAFSS 176
Q LV W N+ ES+GS F F+S
Sbjct: 258 QRLVSWNNVGAAESAGSTGGFVFAS 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,777,876
Number of Sequences: 28952
Number of extensions: 356450
Number of successful extensions: 922
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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