Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l09f
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    50   2e-06
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    40   0.001
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    38   0.007
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    37   0.012
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   2.4  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   3.2  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   3.2  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   3.2  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   3.2  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    28   5.6  
L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    27   7.4  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    27   7.4  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    27   7.4  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 31/97 (31%), Positives = 50/97 (51%)
 Frame = +1

Query: 184 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 363
           RI+GG++ + GA+  +A LV    NG+  +CGA+++ +   VTAAHC    + Q R F  
Sbjct: 37  RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93

Query: 364 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAII 474
                N  +     +     +H  YN  T  ND+A++
Sbjct: 94  VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
 Frame = +1

Query: 184 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRRAQARQFT 360
           R+VGG     GA P  A L    T      CGAS+L  T  +TAAHC+    R  + +  
Sbjct: 26  RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83

Query: 361 LALGTANIFSGGTRV-TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNN 504
           +     N   G  ++     +  +  Y  D   +D+AI+   + G   N
Sbjct: 84  VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFN 131


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 181 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 324
           T I+ G +AN+     LA ++    +G T++CG  L+  +  +T+AHC
Sbjct: 15  TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 26/87 (29%), Positives = 44/87 (50%)
 Frame = +1

Query: 184 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 363
           R++GGS ++  + P    L+  L + R   CG SL+     +TAAHC+   R +   +++
Sbjct: 57  RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCFAKDR-RPTSYSV 112

Query: 364 ALGTANIFSGGTRVTTSNVQMHGSYNM 444
            +G     SG     T+ V +H  YN+
Sbjct: 113 RVGGHRSGSGSPHRVTA-VSIHPWYNI 138


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 408 GDPGASGEDVSCAKSEGELTSLGSPGPP 325
           G+PGA G+D    K +GE    G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +1

Query: 199 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 330
           +A N G   HLA   + +    R      ICG +L+T    +TAAHC++
Sbjct: 32  AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 256 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 125
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 256 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 125
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 454 HNDVAIINHNHVGFTNNIQRINLASGSNN 540
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 454 HNDVAIINHNHVGFTNNIQRINLASGSNN 540
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 454 HNDVAIINHNHVGFTNNIQRINLASGSNN 540
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 408 GDPGASGEDVSCAKSEGELTSLGSPGPP 325
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 408 GDPGASGEDVSCAKSEGELTSLGSPGPP 325
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 408 GDPGASGEDVSCAKSEGELTSLGSPGPP 325
           G+PGA G+      + G   + G PGPP
Sbjct: 219 GNPGAPGQVTETPGTPGPAGAAGPPGPP 246


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 408 GDPGASGEDVSCAKSEGELTSLGSPGPP 325
           G+PGA G+      + G   + G PGPP
Sbjct: 229 GNPGAPGQVTETPGTPGPAGAAGPPGPP 256


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 424 MHGSYNMDTLHNDVAIINHNHVGFTNNIQRIN 519
           +H S N  TL N   I+N     F  ++Q+IN
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,248,302
Number of Sequences: 27780
Number of extensions: 202366
Number of successful extensions: 958
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)