Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l08f
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 357 3e-99
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 357 3e-99
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 357 5e-99
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 357 5e-99
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 357 5e-99
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 357 5e-99
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 357 5e-99
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 357 5e-99
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 349 7e-97
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 341 2e-94
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 287 6e-78
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 226 1e-59
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 183 8e-47
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 163 9e-41
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 163 9e-41
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 163 9e-41
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 157 4e-39
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 144 6e-35
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 110 7e-25
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 50 1e-06
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 48 5e-06
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 32 0.37
U97193-7|AAK68163.1| 299|Caenorhabditis elegans Yeast sir relat... 31 0.48
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 1.9
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 5.9
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 7.9
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 7.9
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 7.9
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 7.9
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 7.9
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 357 bits (878), Expect = 3e-99
Identities = 164/167 (98%), Positives = 167/167 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
EHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PA
Sbjct: 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 132
Query: 464 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
MYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 133 MYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRL 179
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 357 bits (878), Expect = 3e-99
Identities = 164/167 (98%), Positives = 167/167 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
EHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PA
Sbjct: 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 132
Query: 464 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
MYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 133 MYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRL 179
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 357 bits (877), Expect = 5e-99
Identities = 163/167 (97%), Positives = 167/167 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
EHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PA
Sbjct: 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 132
Query: 464 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
MYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 133 MYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRL 179
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 357 bits (877), Expect = 5e-99
Identities = 163/167 (97%), Positives = 167/167 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
EHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PA
Sbjct: 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 132
Query: 464 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
MYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 133 MYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRL 179
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 357 bits (877), Expect = 5e-99
Identities = 163/167 (97%), Positives = 167/167 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
EHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PA
Sbjct: 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 132
Query: 464 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
MYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 133 MYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRL 179
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 357 bits (877), Expect = 5e-99
Identities = 163/167 (97%), Positives = 167/167 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
EHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PA
Sbjct: 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 132
Query: 464 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
MYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 133 MYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRL 179
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 357 bits (877), Expect = 5e-99
Identities = 163/167 (97%), Positives = 167/167 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
EHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PA
Sbjct: 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 132
Query: 464 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
MYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 133 MYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRL 179
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 357 bits (877), Expect = 5e-99
Identities = 163/167 (97%), Positives = 167/167 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
EHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PA
Sbjct: 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 132
Query: 464 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
MYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 133 MYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRL 179
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 349 bits (859), Expect = 7e-97
Identities = 159/167 (95%), Positives = 165/167 (98%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 12 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 71
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
EHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMTQIMFETFN+PA
Sbjct: 72 EHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQIMFETFNTPA 131
Query: 464 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
MYV IQAVLSLYASGRTTGIVLD+GDGV+HTVPIYEGYALPHAI RL
Sbjct: 132 MYVNIQAVLSLYASGRTTGIVLDTGDGVTHTVPIYEGYALPHAIQRL 178
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 341 bits (838), Expect = 2e-94
Identities = 156/161 (96%), Positives = 161/161 (100%)
Frame = +2
Query: 122 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 301
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 302 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 481
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 124
Query: 482 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
AVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 125 AVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRL 165
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 287 bits (703), Expect = 6e-78
Identities = 131/135 (97%), Positives = 135/135 (100%)
Frame = +2
Query: 200 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 379
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 380 LLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 559
LLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTV
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTV 120
Query: 560 PIYEGYALPHAILRL 604
PIYEGYALPHAILRL
Sbjct: 121 PIYEGYALPHAILRL 135
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 226 bits (552), Expect = 1e-59
Identities = 98/168 (58%), Positives = 132/168 (78%), Gaps = 1/168 (0%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A+S RG+ +++YP+
Sbjct: 15 NGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSIEYPM 74
Query: 284 EHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 460
EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE+ +I FETFN P
Sbjct: 75 EHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERSAEIFFETFNVP 134
Query: 461 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
A+Y+ +QAVLSLYA+GRTTG+VLDSGDGV+H VPI +G+A+ HAI R+
Sbjct: 135 ALYIQMQAVLSLYATGRTTGVVLDSGDGVTHAVPIVKGFAMKHAIQRM 182
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 183 bits (446), Expect = 8e-47
Identities = 88/170 (51%), Positives = 118/170 (69%), Gaps = 3/170 (1%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGILTLKY 277
NG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L + Y
Sbjct: 13 NGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINY 72
Query: 278 PIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 454
P+++GI+ NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MFE +
Sbjct: 73 PMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMFEQYG 132
Query: 455 SPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 604
++YVA+QAVL+LYA G TG+V+DSGDGV+H P+YEG+AL H RL
Sbjct: 133 FNSIYVAVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLTRRL 182
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 163 bits (396), Expect = 9e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKI 325
EHGI+TNWDDMEKI
Sbjct: 73 EHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 163 bits (396), Expect = 9e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKI 325
EHGI+TNWDDMEKI
Sbjct: 73 EHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 163 bits (396), Expect = 9e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDMEKI 325
EHGI+TNWDDMEKI
Sbjct: 73 EHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 157 bits (382), Expect = 4e-39
Identities = 70/71 (98%), Positives = 71/71 (100%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 13 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
Query: 284 EHGIITNWDDM 316
EHGI+TNWDDM
Sbjct: 73 EHGIVTNWDDM 83
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 144 bits (348), Expect = 6e-35
Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 21/185 (11%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGMGQKDSYVGDEAQ 247
NG+G K G+AG+ P+ + PS V Q V G+ D ++GDEA
Sbjct: 13 NGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGDEAL 72
Query: 248 SKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 424
S T+KYPI HGI+ +WD ME+ W + LR PE+H LLTE PLN NRE
Sbjct: 73 SPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREY 132
Query: 425 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYA 580
+IMFE+FN P +Y+A+QAVL+L AS + TG+V+DSGDGV+H +P+ +GY
Sbjct: 133 TAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPVADGYV 192
Query: 581 LPHAI 595
+ I
Sbjct: 193 IGSCI 197
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 110 bits (265), Expect = 7e-25
Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 17/182 (9%)
Frame = +2
Query: 107 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA--QSKR------GI 262
GS + GFAG++ P+ PS + Q+ GD + Q+KR G
Sbjct: 19 GSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQTKREKNFFIGT 78
Query: 263 LTLKYP---------IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 415
+ P ++ G+I +W+ EKI H++ N L P EHPVL +E+ N +A
Sbjct: 79 TKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRAR 138
Query: 416 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 595
REK+T+IMFE F PA Y++ VLS +A GRT G+++DSG + VP+++GYA+ HA+
Sbjct: 139 REKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGLMVDSGATQTSVVPVFDGYAVTHAV 198
Query: 596 LR 601
++
Sbjct: 199 VK 200
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 50.0 bits (114), Expect = 1e-06
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 4/171 (2%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NG K G ++PR V SIV + +H+ V + + +E K + ++ PI
Sbjct: 10 NGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSLFYVR-PI 63
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
E G + NWD ++IW TF + V + LT+ A + ++I+F+ F
Sbjct: 64 ERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTE 122
Query: 464 MYVAIQAVLSLYASGRTT----GIVLDSGDGVSHTVPIYEGYALPHAILRL 604
++ + L S + +V+DSG + G + +++R+
Sbjct: 123 VHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRI 173
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 50.0 bits (114), Expect = 1e-06
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 4/171 (2%)
Frame = +2
Query: 104 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 283
NG K G ++PR V SIV + +H+ V + + +E K + ++ PI
Sbjct: 10 NGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSLFYVR-PI 63
Query: 284 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 463
E G + NWD ++IW TF + V + LT+ A + ++I+F+ F
Sbjct: 64 ERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTE 122
Query: 464 MYVAIQAVLSLYASGRTT----GIVLDSGDGVSHTVPIYEGYALPHAILRL 604
++ + L S + +V+DSG + G + +++R+
Sbjct: 123 VHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRI 173
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 48.0 bits (109), Expect = 5e-06
Identities = 42/149 (28%), Positives = 64/149 (42%)
Frame = +2
Query: 149 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIW 328
P++ FP+I R + VG + R I +E I D+ K
Sbjct: 202 PQSFFPAIAVRTDDGKIFVGEDAYRPEIRHNGDFVRPISATDPSVERYSIDK--DVLKAV 259
Query: 329 HHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASG 508
EL+V P ++ VLL+ P ++ QI E + + Q L LYA
Sbjct: 260 IGKVTKELKVEPWKYKVLLSIPQNIPTVLIGELLQICLEDIKFQSAGITRQPSLILYAYD 319
Query: 509 RTTGIVLDSGDGVSHTVPIYEGYALPHAI 595
TTG+V+D G+ V + VP+ +GY + AI
Sbjct: 320 VTTGVVVDIGERV-NIVPVIDGYVVESAI 347
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.9 bits (69), Expect = 0.37
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 546 TPSPESSTIPVVRPEAYSESTAWMATYMAGEL 451
TP P SST+PVV P ++ T +Y+A L
Sbjct: 865 TPQPLSSTMPVVAPSTSTQPTPTTGSYLANTL 896
>U97193-7|AAK68163.1| 299|Caenorhabditis elegans Yeast sir related
protein 2.4 protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.48
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Frame = +2
Query: 233 GDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 412
G + K TL + E + + D + K W T + L + + + PL+ K+
Sbjct: 183 GRSCRGKLRDATLDWDTEISL-NHLDRIRKAWKQTSHL-LCIGTSLEIIPMGSLPLDAKS 240
Query: 413 NREKMTQIMF-ETFNSPAMYVAIQA--VLSLYASGRTTGIVLDSGDGVSHTVPI 565
K T I + ET + + AI A L LY+ G+ +D GD + VPI
Sbjct: 241 KGIKTTTINYQETAHEKIVETAIHADVKLILYSLCNALGVNVDLGDDLPDEVPI 294
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 108 APACARPVSPATTRPAPSSRP 170
AP PATTRPAP+S+P
Sbjct: 320 APPATTRAPPATTRPAPASQP 340
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 213 PIPTITPWWRGRPTMDGKTARGASSPAKPALHMPEPL 103
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 122 KAGFAGDDAPRAVFPSIVGRPRHQG 196
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 423 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 450
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,804
Number of Sequences: 27780
Number of extensions: 265665
Number of successful extensions: 1253
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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