BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11l07r (400 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_02_0140 + 12255418-12255512,12257514-12257793 129 7e-31 08_02_1181 - 24985963-24986242,24987109-24987197 126 6e-30 02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 108 1e-24 01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 27 5.5 03_02_0178 + 6195402-6199158,6199438-6200003 27 7.2 04_01_0359 + 4711289-4713052,4713423-4713950 26 9.5 01_03_0147 - 13125065-13126679,13126802-13127664 26 9.5 >06_02_0140 + 12255418-12255512,12257514-12257793 Length = 124 Score = 129 bits (312), Expect = 7e-31 Identities = 64/115 (55%), Positives = 81/115 (70%), Gaps = 2/115 (1%) Frame = -3 Query: 341 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 162 K +R G + +EVVTREYT+NLHKRLHG FKK+AP AIKEIRKFA+K MGT D+RVD + Sbjct: 4 KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63 Query: 161 LNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKGCRQK 3 LNK +WS G+R+VP RND+ED+ +L++LVT VP +KG K Sbjct: 64 LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 118 >08_02_1181 - 24985963-24986242,24987109-24987197 Length = 122 Score = 126 bits (304), Expect = 6e-30 Identities = 64/114 (56%), Positives = 80/114 (70%), Gaps = 3/114 (2%) Frame = -3 Query: 335 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 159 E+KG +A E VVTREYT+NLHKRLH FKK+AP AIKEIRKFA+K MGT D+RVD +L Sbjct: 3 EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62 Query: 158 NKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKGCRQK 3 NK +WS G+R+VP RND+ED+ +L++LVT VP +KG K Sbjct: 63 NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTK 116 >02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 Length = 139 Score = 108 bits (260), Expect = 1e-24 Identities = 59/121 (48%), Positives = 76/121 (62%), Gaps = 18/121 (14%) Frame = -3 Query: 311 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 180 +EVVTREYT+NLHKRLHG FKK+AP AIKEIRKFA+K MGT D Sbjct: 13 DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72 Query: 179 IRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKGCRQ 6 IR+D +LNK +W+ G+R+VP RND+ED+ +L++LVT +P +KG Sbjct: 73 IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGT 132 Query: 5 K 3 K Sbjct: 133 K 133 >01_06_0668 + 31058497-31059510,31059609-31059676,31060189-31060270, 31060339-31060431,31060516-31060668,31060900-31060968, 31061091-31061184,31061594-31061677,31062133-31062221, 31062340-31062456,31062567-31062707,31062823-31063005 Length = 728 Score = 27.1 bits (57), Expect = 5.5 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 284 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 180 +N+ ++G GF A + E+ K A KQ+ PD Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475 >03_02_0178 + 6195402-6199158,6199438-6200003 Length = 1440 Score = 26.6 bits (56), Expect = 7.2 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -3 Query: 371 TKLKITMAKPKGERKGKSAINEVVTREYTVNL 276 T L + M KP E KGK +V+++E + + Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735 >04_01_0359 + 4711289-4713052,4713423-4713950 Length = 763 Score = 26.2 bits (55), Expect = 9.5 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = +3 Query: 123 NISDSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDCSW 236 NI R +F+ A Y ++ L+F+ SD F W Sbjct: 48 NILQCQRVSDFLIAMAYFSIPLELLYFATCSDLFPLKW 85 >01_03_0147 - 13125065-13126679,13126802-13127664 Length = 825 Score = 26.2 bits (55), Expect = 9.5 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +1 Query: 124 TFLTPLDQRNLFKRVSTRMSGVPICFS 204 ++LT L RNL + + R +G P C++ Sbjct: 481 SYLTDLISRNLIQALHLRHNGTPSCYT 507 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,810,050 Number of Sequences: 37544 Number of extensions: 175923 Number of successful extensions: 369 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 366 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 369 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 682720236 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -