Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l07r
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...   149   5e-37
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    77   4e-15
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC024860-2|AAN84888.1|  173|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score =  149 bits (362), Expect = 5e-37
 Identities = 67/110 (60%), Positives = 85/110 (77%)
 Frame = -3

Query: 344 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDT 165
           PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62

Query: 164 RLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIKG 15
           +LNKF+WSKG++NVP+         RN+DEDSA KL+TL TYVP  +  G
Sbjct: 63  KLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHG 112


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 34/60 (56%), Positives = 43/60 (71%)
 Frame = -3

Query: 194 MGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIKG 15
           M T D+RVDT+LNKF+WSKG++NVP+         RN+DEDSA KL+TL TYVP  +  G
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHG 60


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = -3

Query: 344 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRA---IKEIRKF-AEKQMGTPDI 177
           PK E +  + I E + R Y++   +RL  +     APRA    +  R+F A K+M   + 
Sbjct: 71  PKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEA 130

Query: 176 RVDTRLNKFLWSKGVRNVP 120
            ++ + N+ L ++G+   P
Sbjct: 131 SIEEQRNR-LMAEGIAVPP 148


>AC024860-2|AAN84888.1|  173|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.3 protein.
          Length = 173

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 263 HGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 171
           + V  K + P+ I++IRKF +  + +PD  V
Sbjct: 126 YNVDSKIKQPQVIEDIRKFVKIHVDSPDSEV 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,828,243
Number of Sequences: 27780
Number of extensions: 166785
Number of successful extensions: 360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)