Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l05r
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    92   4e-20
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   1.6  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   2.2  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    25   3.8  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   3.8  
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    25   3.8  
SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyc...    25   6.6  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   6.6  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    24   8.7  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    24   8.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   8.7  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    24   8.7  

>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 91.9 bits (218), Expect = 4e-20
 Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
 Frame = -3

Query: 426 IEKLKE-QKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNME 250
           ++ LKE Q +     + L+D +  KA V    +V LWLGANVMLEY++E+AE LLT  + 
Sbjct: 67  VQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEEAEALLTQKLN 126

Query: 249 TAQENLNQVEHDLDFLRDQCTTTEVNMARVYNWDVKKRQ 133
           +A+E L   + DL+FLR Q TT EVN ARVYN+ V  R+
Sbjct: 127 SAEETLKACKEDLEFLRAQVTTMEVNTARVYNYTVLLRK 165


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 118 HYHLLSLTTTECVDC 74
           +Y LL L TTECV+C
Sbjct: 759 NYGLLDLITTECVEC 773


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +2

Query: 266 SNFSASSRLYSNITLA----PSHKHTDFVGGTLA 355
           SNFS ++   S+ T +    P+H+HT F G TL+
Sbjct: 272 SNFSRATSSRSSKTRSVVYEPNHRHTSFFGDTLS 305


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +2

Query: 272 FSASSRLYSNITLAPSHKHTDFVGGTL 352
           FSASSR  S  +   S K TDFV  TL
Sbjct: 127 FSASSRASSTKSTLSSVKETDFVTETL 153


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 423 EKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLW 319
           E+++  +E VE   LLS + FVK  + P K + L+
Sbjct: 186 EQIERLREVVELP-LLSPERFVKLGIDPPKGIMLY 219


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = -3

Query: 423 EKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMETA 244
           ++ +  KE+ + Q    D   +K  +PP K V  W    +  ++    AE  L  N E +
Sbjct: 39  DRFRGTKEDEKKQIADKDMAAMKVVIPPKKRVSKWKDIQLFEKF----AEPSL--NREDS 92

Query: 243 QENLNQVEHDL 211
            + +N++   L
Sbjct: 93  LKMINEIRKSL 103


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 393 ETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYS 289
           E Q L    + VK   PP +   +W+G +++   S
Sbjct: 316 EIQALAPSSMKVKIVAPPERKYSVWIGGSILASLS 350


>SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 309 NVMLEYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQC 190
           N+ML    +D   LL     + ++ L + +HD    R  C
Sbjct: 57  NIMLSNIGKDKSDLLVAGATSIEDALTKYQHDNQLFRRPC 96


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 58  NLLYWSSQHIQLLLNLTSGNAT 123
           N ++W+S   Q LLNL S N++
Sbjct: 379 NFVHWNSTVYQELLNLKSNNSS 400


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 267 LTTNMETAQENLNQVEHDLDFLRDQCTT 184
           LT  ++  Q  +  V HD+DFL   CT+
Sbjct: 675 LTRAVKRFQGGVILVSHDVDFLDKTCTS 702


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 163 SLQLGCEETPGSFWSHYHL 107
           +L LG  ETP +F  HY+L
Sbjct: 18  TLLLGTRETPVTFLFHYYL 36


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 288 LEDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTE-VNMARVYNWDVKKRQAA 127
           LED  KLL   +   +E L +     D +   C++ + VN A     D   +Q A
Sbjct: 83  LEDERKLLENELSQIKEYLREKSSSYDTVLHDCSSLKSVNEALKQAQDQNLKQTA 137


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 423  EKLKEQKEEVETQFLLSDQVFVKANVPPTK 334
            E L+++K +  T  +LSD  F+KA   PTK
Sbjct: 1099 ELLEQEKADASTTTVLSDSRFMKA---PTK 1125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,778
Number of Sequences: 5004
Number of extensions: 30507
Number of successful extensions: 105
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)