Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l05r
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0782 + 23114532-23114596,23116259-23116316,23116445-231165...    81   4e-16
09_01_0025 - 441528-444284                                             30   0.69 
02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353...    29   2.1  
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165     27   4.9  
03_05_0597 + 25996650-25996707,25998017-25998084,25998672-259987...    27   8.5  

>12_02_0782 +
           23114532-23114596,23116259-23116316,23116445-23116516,
           23117468-23117587,23117668-23117769,23118254-23118274
          Length = 145

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 38/87 (43%), Positives = 56/87 (64%)
 Frame = -3

Query: 426 IEKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMET 247
           ++  K   E +   F LS+ ++ +A +  T SVCLWLGANVMLEYS ++A  LL  N+E 
Sbjct: 57  LQAKKALGEALTADFELSEGIYSRAKIEDTDSVCLWLGANVMLEYSCDEANALLKKNLEN 116

Query: 246 AQENLNQVEHDLDFLRDQCTTTEVNMA 166
           A+ +L  +  DL FLRDQ T T++ ++
Sbjct: 117 AKASLEVLVADLQFLRDQQTITQIRLS 143


>09_01_0025 - 441528-444284
          Length = 918

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 201 RDQCTTTEVNMARVYNWDVKKRQAASGRITTC 106
           +DQC+++  N   +Y WDV  R +  G+  +C
Sbjct: 459 KDQCSSSSQNAHHLYAWDVPSRISLIGQHCSC 490


>02_02_0592 -
           11934238-11934249,11934755-11934835,11935166-11935324,
           11936362-11936442,11936523-11936591,11937147-11937260,
           11937805-11937858,11938788-11938915,11940527-11940782
          Length = 317

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -3

Query: 300 LEYSLEDAEKLLTTNMETAQENLNQV---EHDLDFLRDQCTTTEVNMARVY 157
           LE  LE+  K L +     +EN N +   EHD++ L ++  +T+ + ++ Y
Sbjct: 85  LESLLEENTKTLKSKANNLEENSNLIGTMEHDIEILMNKYESTKKSQSKSY 135


>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
          Length = 476

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 237 NLNQVEHDLDFLRDQCTTTEVN 172
           N N+ +H + FLRD C +  VN
Sbjct: 187 NYNEEKHRIGFLRDVCASVSVN 208


>03_05_0597 +
           25996650-25996707,25998017-25998084,25998672-25998747,
           25999334-25999441,25999570-25999668,26000149-26000274,
           26001041-26001174
          Length = 222

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 318 LGANVMLEYSLEDAEKLLTTNMETAQENLNQVE 220
           +GA+ +  ++++DA ++    M  AQE LN +E
Sbjct: 125 MGASRLARFAVDDARRMKVVEMGGAQELLNVLE 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,749,635
Number of Sequences: 37544
Number of extensions: 167952
Number of successful extensions: 388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)