Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l05r
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81587-7|CAB04707.1| 185|Caenorhabditis elegans Hypothetical pr... 100 4e-22
Z71177-4|CAA94870.1| 529|Caenorhabditis elegans Hypothetical pr... 34 0.038
AC006625-4|AAK68276.1| 446|Caenorhabditis elegans Hypothetical ... 31 0.35
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 30 0.61
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 30 0.61
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 30 0.61
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 30 0.81
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 30 0.81
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 29 1.4
Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical pr... 27 4.3
AL031632-5|CAE11314.1| 324|Caenorhabditis elegans Hypothetical ... 27 4.3
Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical p... 27 5.7
Z70682-3|CAE46662.1| 187|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z70682-2|CAA94582.2| 151|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z69716-3|CAA93529.1| 335|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z68302-7|CAH60770.1| 495|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z68302-6|CAA92635.2| 510|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z99270-2|CAB16469.3| 477|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81048-1|CAB02839.1| 587|Caenorhabditis elegans Hypothetical pr... 26 10.0
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 26 10.0
L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily ass... 26 10.0
L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily ass... 26 10.0
AB033380-1|BAA92264.1| 587|Caenorhabditis elegans kinesin like ... 26 10.0
>Z81587-7|CAB04707.1| 185|Caenorhabditis elegans Hypothetical
protein T06G6.9 protein.
Length = 185
Score = 100 bits (240), Expect = 4e-22
Identities = 46/92 (50%), Positives = 66/92 (71%)
Frame = -3
Query: 402 EEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMETAQENLNQV 223
E ET FLLSD V+ KA V + V +WLGANVM+EY LE+A KLL N + Q+ ++++
Sbjct: 86 ESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKLLDKNRGSVQKVVDEL 145
Query: 222 EHDLDFLRDQCTTTEVNMARVYNWDVKKRQAA 127
++L +++DQ TTTEVNM+ + N+ V KR+AA
Sbjct: 146 TNELSYIKDQITTTEVNMSHIVNFGVNKRRAA 177
>Z71177-4|CAA94870.1| 529|Caenorhabditis elegans Hypothetical
protein AC3.7 protein.
Length = 529
Score = 34.3 bits (75), Expect = 0.038
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -3
Query: 315 GANVMLEYSLEDAEKLLTTNME-TAQENLNQVEHDL-DFLRDQCTTTEVNMARVYNWDVK 142
GA V +Y LEDAEKL + E E N+ H + D LR+Q + N+ + + K
Sbjct: 412 GATVFDKYDLEDAEKLTSAIKEIIGNEEFNKKSHHIADLLRNQPIDPKANLLKHVEFSAK 471
>AC006625-4|AAK68276.1| 446|Caenorhabditis elegans Hypothetical
protein C55B7.5 protein.
Length = 446
Score = 31.1 bits (67), Expect = 0.35
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -3
Query: 426 IEKLKEQKEEVETQFLLSD---QVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTN 256
+E+ KE +++E L F A+V T V + +GAN E S+ AEK+L
Sbjct: 34 LERAKEYSKKLEAPILAKICEVGYFCGAHVVRTNQVTMEMGANYYGECSIHTAEKILDRR 93
Query: 255 METAQENLNQVEHDLDFLR 199
+ E Q E LD +R
Sbjct: 94 V---SEMRRQREEGLDSIR 109
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 30.3 bits (65), Expect = 0.61
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = -3
Query: 426 IEKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWL-GANVMLEYSLEDAEKLLTTNME 250
I K++++ V + + ++ V +S + G N LE ++D L N E
Sbjct: 287 IRKIQDESVRVNPDLYKEELISIRTTVTNVRSRLAEVEGRNFFLERLIDD----LKNNEE 342
Query: 249 TAQENLNQVEHDLDF--LRDQCTTTEVNMARVYNWDVKKR 136
++ E D LRDQCT + M ++ + ++ R
Sbjct: 343 AKFFEISLAERDAQIATLRDQCTELSIQMEKLCDNEISLR 382
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 30.3 bits (65), Expect = 0.61
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = -3
Query: 426 IEKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWL-GANVMLEYSLEDAEKLLTTNME 250
I K++++ V + + ++ V +S + G N LE ++D L N E
Sbjct: 913 IRKIQDESVRVNPDLYKEELISIRTTVTNVRSRLAEVEGRNFFLERLIDD----LKNNEE 968
Query: 249 TAQENLNQVEHDLDF--LRDQCTTTEVNMARVYNWDVKKR 136
++ E D LRDQCT + M ++ + ++ R
Sbjct: 969 AKFFEISLAERDAQIATLRDQCTELSIQMEKLCDNEISLR 1008
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 30.3 bits (65), Expect = 0.61
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = -3
Query: 426 IEKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWL-GANVMLEYSLEDAEKLLTTNME 250
I K++++ V + + ++ V +S + G N LE ++D L N E
Sbjct: 913 IRKIQDESVRVNPDLYKEELISIRTTVTNVRSRLAEVEGRNFFLERLIDD----LKNNEE 968
Query: 249 TAQENLNQVEHDLDF--LRDQCTTTEVNMARVYNWDVKKR 136
++ E D LRDQCT + M ++ + ++ R
Sbjct: 969 AKFFEISLAERDAQIATLRDQCTELSIQMEKLCDNEISLR 1008
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 315 GANVMLEYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQ 193
G N++LE +ED + +M + +++LN + ++ LRD+
Sbjct: 347 GRNLLLEKQIEDLNYQMEEDMRSYEQSLNDKDTSINKLRDE 387
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 315 GANVMLEYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQ 193
G N++LE +ED + +M + +++LN + ++ LRD+
Sbjct: 330 GRNLLLEKQIEDLNYQMEEDMRSYEQSLNDKDTSINKLRDE 370
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 261 TNMETAQENLNQVEHDLDFLRDQCTTTE 178
T M+TA+E N++ L L+DQ T E
Sbjct: 363 TRMQTAEETANEMRGHLQLLKDQLTNRE 390
>Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical
protein C17E4.2 protein.
Length = 819
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -3
Query: 309 NVMLEYS-LEDAEKLLTTNMETAQENLNQVEHDLDFL---RDQCTTTEVNMARVYNWDVK 142
N+ + + ++ ++L T +E + + + LD + RD+C ++ ++R Y ++K
Sbjct: 38 NLQINFEKIQTENEILKTQLEEKETEAEESQRLLDVIHKDRDECIEEKMKVSRFYRNEIK 97
Query: 141 K 139
K
Sbjct: 98 K 98
>AL031632-5|CAE11314.1| 324|Caenorhabditis elegans Hypothetical
protein Y32B12B.7 protein.
Length = 324
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 271 FFSIFKTI--LQHYISSKPQAY*LCWWYISLH 360
FF + TI + HYIS QA+ + W++ H
Sbjct: 273 FFDLINTISYIVHYISLDAQAHVITWYFYCTH 304
>Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical
protein F32D8.10 protein.
Length = 399
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 31 LQMCFVFIMNLLYWSSQHIQLLLNLTSGNATRSCLAFLHIPVVNSSHIHFGSGTLI 198
L + VFI Y + +++L+N TS +S IP++ SHI S T +
Sbjct: 86 LSLFDVFIA-FAYIAVMSVRILVNFTSSVFLKSIWVHYMIPMLTVSHIGITSSTFL 140
>Z70682-3|CAE46662.1| 187|Caenorhabditis elegans Hypothetical
protein F08G5.3b protein.
Length = 187
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/42 (23%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -3
Query: 258 NMETAQENLNQVEHDLDFLRDQCTTTEVNMAR-VYNWDVKKR 136
NM+T Q+ L++++ + +RD+ + +++ +YN D++ +
Sbjct: 80 NMDTIQKLLDEIKREKQLMRDEAHIIKGELSKTMYNEDLRSK 121
>Z70682-2|CAA94582.2| 151|Caenorhabditis elegans Hypothetical
protein F08G5.3a protein.
Length = 151
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/42 (23%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -3
Query: 258 NMETAQENLNQVEHDLDFLRDQCTTTEVNMAR-VYNWDVKKR 136
NM+T Q+ L++++ + +RD+ + +++ +YN D++ +
Sbjct: 44 NMDTIQKLLDEIKREKQLMRDEAHIIKGELSKTMYNEDLRSK 85
>Z69716-3|CAA93529.1| 335|Caenorhabditis elegans Hypothetical
protein C04B4.3 protein.
Length = 335
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 414 KEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEY 292
K++ E + + + D+VF+K N+ K L G+N+ EY
Sbjct: 252 KKEAEFIASIWSKDDEVFLKGNLVWGKQTSLVPGSNIWKEY 292
>Z68302-7|CAH60770.1| 495|Caenorhabditis elegans Hypothetical
protein ZK792.4b protein.
Length = 495
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 282 DAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMARVY 157
D + + + E + L +E D+D LRD TE+++ + +
Sbjct: 423 DVAESIKSEAEIVRHRLRFIEDDIDSLRDTGAQTEMDLLQTH 464
>Z68302-6|CAA92635.2| 510|Caenorhabditis elegans Hypothetical
protein ZK792.4a protein.
Length = 510
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 282 DAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMARVY 157
D + + + E + L +E D+D LRD TE+++ + +
Sbjct: 438 DVAESIKSEAEIVRHRLRFIEDDIDSLRDTGAQTEMDLLQTH 479
>Z99270-2|CAB16469.3| 477|Caenorhabditis elegans Hypothetical
protein Y37A1A.2 protein.
Length = 477
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 271 FFSIFKTILQHYISSK 318
FFS+F +Q+YISSK
Sbjct: 69 FFSLFTATIQYYISSK 84
>Z81048-1|CAB02839.1| 587|Caenorhabditis elegans Hypothetical
protein C41G7.2 protein.
Length = 587
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 195 QCTTTEVNMARVYNWDVKKRQAASGRITTC 106
+C + VY W +K Q ++G TTC
Sbjct: 436 KCNGSSSRSHAVYMWKIKAHQPSTGISTTC 465
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical protein
C18C4.5b protein.
Length = 1046
Score = 26.2 bits (55), Expect = 10.0
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = -3
Query: 417 LKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMETAQE 238
L+ +KE++ QF ++ AN+ T+ A+ + +LE L + +ETA+
Sbjct: 903 LQMEKEKISKQF---EERLKTANLEKTRLASELQMADSR-KNTLEKQVDELQSQVETAER 958
Query: 237 NLNQVEHDLDFLRDQ 193
N + H LD +R++
Sbjct: 959 NRRRDLHQLDMVREE 973
>L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform a protein.
Length = 834
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -3
Query: 294 YSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMARVYNW 151
Y+LE +++LT + + + ++EH L+ R + T + +A + +
Sbjct: 214 YNLERKKRILTDKLSVQENRVQELEHQLEDARFE-TDKHMRLANKFEY 260
>L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform b protein.
Length = 837
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -3
Query: 294 YSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMARVYNW 151
Y+LE +++LT + + + ++EH L+ R + T + +A + +
Sbjct: 214 YNLERKKRILTDKLSVQENRVQELEHQLEDARFE-TDKHMRLANKFEY 260
>AB033380-1|BAA92264.1| 587|Caenorhabditis elegans kinesin like
protein protein.
Length = 587
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 195 QCTTTEVNMARVYNWDVKKRQAASGRITTC 106
+C + VY W +K Q ++G TTC
Sbjct: 436 KCNGSSSRSHAVYMWKIKAHQPSTGISTTC 465
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,847
Number of Sequences: 27780
Number of extensions: 165482
Number of successful extensions: 531
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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