Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l05r
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49510.1 68418.m06127 VHL binding protein, putative / prefold... 102 9e-23
At5g06060.1 68418.m00671 tropinone reductase, putative / tropine... 29 1.0
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 1.0
At2g29330.1 68415.m03562 tropinone reductase, putative / tropine... 28 2.3
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 28 2.3
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m... 28 3.1
At2g29150.1 68415.m03543 tropinone reductase, putative / tropine... 27 5.4
At3g53120.1 68416.m05854 expressed protein 27 7.1
At3g28320.1 68416.m03538 hypothetical protein similar to At14a (... 27 7.1
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 27 7.1
At5g60640.2 68418.m07611 thioredoxin family protein similar to p... 26 9.4
At5g60640.1 68418.m07610 thioredoxin family protein similar to p... 26 9.4
At4g39820.1 68417.m05641 expressed protein 26 9.4
At4g17120.1 68417.m02578 expressed protein 26 9.4
>At5g49510.1 68418.m06127 VHL binding protein, putative / prefoldin,
putative similar to Swiss-Prot:Q15765 prefoldin subunit
3 (Von Hippel-Lindau binding protein 1; VHL binding
protein-1; VBP-1; HIBBJ46) [Mus musculus]
Length = 195
Score = 102 bits (245), Expect = 9e-23
Identities = 49/98 (50%), Positives = 66/98 (67%)
Frame = -3
Query: 426 IEKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMET 247
+E K E + F +S+ ++ +A + T SVCLWLGANVMLEYS E+A LL N+E
Sbjct: 84 LEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEASALLKNNLEN 143
Query: 246 AQENLNQVEHDLDFLRDQCTTTEVNMARVYNWDVKKRQ 133
A+ +L + DL FLRDQ T T+V +ARVYNWDV +R+
Sbjct: 144 AKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRR 181
>At5g06060.1 68418.m00671 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 264
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = -3
Query: 318 LGANVM---LEYSLEDAEKLLTTNMETAQENLNQVEHDL 211
+G NV +EYS E+ K+++TN+E+A +L+Q+ H L
Sbjct: 97 VGTNVRKPTVEYSSEEYAKIMSTNLESA-FHLSQIAHPL 134
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 285 EDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMAR 163
EDA + T +ETA ++N D + D C TE +R
Sbjct: 699 EDAADVSTPKLETADNSVNAKRGSSDEVSDNCINTEKKYSR 739
>At2g29330.1 68415.m03562 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 260
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -3
Query: 300 LEYSLEDAEKLLTTNMETAQENLNQVEHDL 211
+EY ED L++TN+E+A +L+Q+ H L
Sbjct: 104 IEYEAEDFSFLISTNLESAY-HLSQLSHPL 132
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 28.3 bits (60), Expect = 2.3
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = -3
Query: 420 KLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMETAQ 241
K++ KEE++ L + + ++ ++ L G + L+ LE+AEK LT + Q
Sbjct: 552 KIRSFKEEIDRVNLEIESAEREYDL--NRAAELKYGTLLSLQRQLEEAEKNLTNFRQFGQ 609
Query: 240 ENLNQVEHDLD 208
L +V DLD
Sbjct: 610 SLLREVVTDLD 620
>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
myosin heavy chain (GI:1408194) {Placopecten
magellanicus}; similar to Myosin heavy chain, clone 203
(Fragment) (SP:P39922){Hydra attenuata}; contains one
transmembrane domain
Length = 323
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -3
Query: 405 KEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVM-LEYSLEDAEKLLTTNMETAQENLN 229
K + E Q +++++ V+ ++ ++ + L + ++ L+ L+DAEK++ +E LN
Sbjct: 222 KGKTELQKWITEKMVVEDSLKDSEKKVVALESEIVELQKQLDDAEKMINGLKNVVEEPLN 281
Query: 228 QVE 220
+E
Sbjct: 282 GIE 284
>At2g29150.1 68415.m03543 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 268
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 297 EYSLEDAEKLLTTNMETAQENLNQVEHDL 211
EY+ ED L+ TN+E+A +L+Q+ H L
Sbjct: 114 EYTAEDYSFLMATNLESA-FHLSQIAHPL 141
>At3g53120.1 68416.m05854 expressed protein
Length = 217
Score = 26.6 bits (56), Expect = 7.1
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = -3
Query: 426 IEKLKEQKEEVETQFLLS-DQVFVKANVPPT-KSVCLWLGA-NVMLEYSLEDAEK----L 268
+ KL K+ + QFLLS DQV V+ N+ + L L N+ E + + +
Sbjct: 70 LRKLLSDKDAYQ-QFLLSLDQVKVQNNIKDELRRETLQLARDNLEKEPQIMELRNQCRII 128
Query: 267 LTTNMETAQENLNQVE 220
TT + TAQE LN++E
Sbjct: 129 RTTELATAQEKLNELE 144
>At3g28320.1 68416.m03538 hypothetical protein similar to At14a
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 280
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Frame = -3
Query: 330 VCLWLGANVMLEYSLEDAEKLL-------------TTNMETAQENLNQVEHDLDFLRDQC 190
V W+G N +L SLE +K L T ME +E + V +D L+DQ
Sbjct: 154 VVQWVGVNYVLNNSLEALQKQLKALNKVKPIPERITEGMEADKEGMKSVPEQVDELKDQI 213
Query: 189 TT 184
++
Sbjct: 214 SS 215
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -3
Query: 411 EQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMETAQENL 232
E++ E L + + +K PP + +W+G +++ SL E++ T E +EN
Sbjct: 264 EERMTKEINALAAANMRIKIVAPPERKYSVWIGGSILA--SLSTYEQMWITKAE-YEENG 320
Query: 231 NQVEH 217
+ H
Sbjct: 321 PAIVH 325
>At5g60640.2 68418.m07611 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 536
Score = 26.2 bits (55), Expect = 9.4
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 318 LGANVMLEYSLEDAEKLLTTNMETAQENLNQ---VEHDLDFLRDQCTTTEVNMARVYNWD 148
+G V +L+DAEK+LT+ + LN VEHD +VN + N D
Sbjct: 207 IGPGVYNLTTLDDAEKVLTSGNKVVLGYLNSLVGVEHD-QLNAASKAEDDVNFYQTVNPD 265
Query: 147 VKK 139
V K
Sbjct: 266 VAK 268
>At5g60640.1 68418.m07610 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 597
Score = 26.2 bits (55), Expect = 9.4
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 318 LGANVMLEYSLEDAEKLLTTNMETAQENLNQ---VEHDLDFLRDQCTTTEVNMARVYNWD 148
+G V +L+DAEK+LT+ + LN VEHD +VN + N D
Sbjct: 207 IGPGVYNLTTLDDAEKVLTSGNKVVLGYLNSLVGVEHD-QLNAASKAEDDVNFYQTVNPD 265
Query: 147 VKK 139
V K
Sbjct: 266 VAK 268
>At4g39820.1 68417.m05641 expressed protein
Length = 408
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 303 MLEYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTE 178
M+ +SL L+ T + QE L+++ LDF+RD+ E
Sbjct: 157 MVPFSLRWLYALIPTKLGNRQEGLDRLYVLLDFVRDRIREKE 198
>At4g17120.1 68417.m02578 expressed protein
Length = 1661
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 333 SVCLWLGANVML-EYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVN 172
+ C LG +V+ E S++D + + +L VE++ DFL D C ++VN
Sbjct: 730 AACWRLGNDVVASEVSMQDGNRYVNVR------SLVSVENNTDFLLDLCLQSKVN 778
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,177,106
Number of Sequences: 28952
Number of extensions: 145073
Number of successful extensions: 401
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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