Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l05f
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    92   4e-20
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   1.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   2.5  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    25   4.4  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   4.4  
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    25   4.4  
SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyc...    25   7.7  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   7.7  

>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 91.9 bits (218), Expect = 4e-20
 Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
 Frame = +3

Query: 3   IEKLKE-QKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNME 179
           ++ LKE Q +     + L+D +  KA V    +V LWLGANVMLEY++E+AE LLT  + 
Sbjct: 67  VQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEEAEALLTQKLN 126

Query: 180 TAQENLNQVEHDLDFLRDQCTTTEVNMARVYNWDVKKRQ 296
           +A+E L   + DL+FLR Q TT EVN ARVYN+ V  R+
Sbjct: 127 SAEETLKACKEDLEFLRAQVTTMEVNTARVYNYTVLLRK 165


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 311 HYHLLSLTTTECVDC 355
           +Y LL L TTECV+C
Sbjct: 759 NYGLLDLITTECVEC 773


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -1

Query: 163 SNFSASSRLYSNITLA----PSHKHTDFVGGTLA 74
           SNFS ++   S+ T +    P+H+HT F G TL+
Sbjct: 272 SNFSRATSSRSSKTRSVVYEPNHRHTSFFGDTLS 305


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -1

Query: 157 FSASSRLYSNITLAPSHKHTDFVGGTL 77
           FSASSR  S  +   S K TDFV  TL
Sbjct: 127 FSASSRASSTKSTLSSVKETDFVTETL 153


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 6   EKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLW 110
           E+++  +E VE   LLS + FVK  + P K + L+
Sbjct: 186 EQIERLREVVELP-LLSPERFVKLGIDPPKGIMLY 219


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +3

Query: 6   EKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMETA 185
           ++ +  KE+ + Q    D   +K  +PP K V  W    +  ++    AE  L  N E +
Sbjct: 39  DRFRGTKEDEKKQIADKDMAAMKVVIPPKKRVSKWKDIQLFEKF----AEPSL--NREDS 92

Query: 186 QENLNQVEHDL 218
            + +N++   L
Sbjct: 93  LKMINEIRKSL 103


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 36  ETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYS 140
           E Q L    + VK   PP +   +W+G +++   S
Sbjct: 316 EIQALAPSSMKVKIVAPPERKYSVWIGGSILASLS 350


>SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 120 NVMLEYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQC 239
           N+ML    +D   LL     + ++ L + +HD    R  C
Sbjct: 57  NIMLSNIGKDKSDLLVAGATSIEDALTKYQHDNQLFRRPC 96


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 371 NLLYWSSQHIQLLLNLTSGNAT 306
           N ++W+S   Q LLNL S N++
Sbjct: 379 NFVHWNSTVYQELLNLKSNNSS 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,263
Number of Sequences: 5004
Number of extensions: 32900
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)