Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l05f
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16818| Best HMM Match : Prefoldin (HMM E-Value=0.00051)             64   7e-11
SB_24029| Best HMM Match : Kinesin (HMM E-Value=2.10195e-44)           29   1.9  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   3.4  
SB_43840| Best HMM Match : NDK (HMM E-Value=0)                         27   5.9  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            27   7.8  

>SB_16818| Best HMM Match : Prefoldin (HMM E-Value=0.00051)
          Length = 162

 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 29/48 (60%), Positives = 41/48 (85%)
 Frame = +3

Query: 117 ANVMLEYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNM 260
           ANVMLEYS+++AE+LL  N++TA ++L ++E DL FLRDQ TTTEV++
Sbjct: 92  ANVMLEYSIDEAEELLQKNLKTAIKSLEELEDDLGFLRDQYTTTEVSI 139


>SB_24029| Best HMM Match : Kinesin (HMM E-Value=2.10195e-44)
          Length = 534

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 6   EKLKEQKEEVETQFLLSDQVFVK-ANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMET 182
           +  K  KEE+E Q L   Q F     V   +   +      +LE +++DA  L T N E 
Sbjct: 407 DSYKRHKEEMEIQQLQHFQTFRNYREVFEDQKSAIEQRYRTLLEEAIQDAVFLSTRNQEL 466

Query: 183 AQEN 194
            QEN
Sbjct: 467 LQEN 470


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +3

Query: 18   EQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAE-KLLTTNMETAQEN 194
            E++ E++++   + +  +     P     + + +  M+E S +D E ++L  ++ET Q  
Sbjct: 1576 EKENELQSKLSQAHEQIINLENRPQLESAISMVSESMVESSGDDMETQILRQDLETLQSK 1635

Query: 195  LNQVEHDLDFLRDQ 236
             +++E     L+DQ
Sbjct: 1636 YDKLERQNKLLQDQ 1649


>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
          Length = 786

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 317 GNATRSCLAFLHIPVVNSSHIHFGSGTLIS*EIQIMF 207
           G+ATR+  A +H+ V  SSH  F +   +S ++++ F
Sbjct: 413 GSATRA--AGIHVSVTQSSHRGFDNYAFVSRQVEVSF 447


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +3

Query: 108  WLGANVMLEYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMARVYNWDVK 287
            WL     + YS++++ +    N   A+E ++ +E +L+   +Q    E      +   V+
Sbjct: 1115 WLAELGPMFYSVKESTRSRAENRRRAKEEMSAMERELEEASEQIKAREQEKLNKHVASVR 1174

Query: 288  KRQAASGRIT 317
             +    GR T
Sbjct: 1175 TKIVTPGRKT 1184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,270,395
Number of Sequences: 59808
Number of extensions: 219933
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)