Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l05f
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-7|CAB04707.1|  185|Caenorhabditis elegans Hypothetical pr...   100   5e-22
Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical pr...    34   0.045
AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical ...    31   0.42 
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    30   0.73 
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    30   0.73 
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    30   0.73 
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    30   0.96 
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    30   0.96 
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    29   1.7  
Z81037-1|CAB02745.1|  819|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z70682-3|CAE46662.1|  187|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z70682-2|CAA94582.2|  151|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z69716-3|CAA93529.1|  335|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z81587-7|CAB04707.1|  185|Caenorhabditis elegans Hypothetical
           protein T06G6.9 protein.
          Length = 185

 Score =  100 bits (240), Expect = 5e-22
 Identities = 46/92 (50%), Positives = 66/92 (71%)
 Frame = +3

Query: 27  EEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMETAQENLNQV 206
           E  ET FLLSD V+ KA V   + V +WLGANVM+EY LE+A KLL  N  + Q+ ++++
Sbjct: 86  ESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKLLDKNRGSVQKVVDEL 145

Query: 207 EHDLDFLRDQCTTTEVNMARVYNWDVKKRQAA 302
            ++L +++DQ TTTEVNM+ + N+ V KR+AA
Sbjct: 146 TNELSYIKDQITTTEVNMSHIVNFGVNKRRAA 177


>Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical
           protein AC3.7 protein.
          Length = 529

 Score = 34.3 bits (75), Expect = 0.045
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 114 GANVMLEYSLEDAEKLLTTNME-TAQENLNQVEHDL-DFLRDQCTTTEVNMARVYNWDVK 287
           GA V  +Y LEDAEKL +   E    E  N+  H + D LR+Q    + N+ +   +  K
Sbjct: 412 GATVFDKYDLEDAEKLTSAIKEIIGNEEFNKKSHHIADLLRNQPIDPKANLLKHVEFSAK 471


>AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical
           protein C55B7.5 protein.
          Length = 446

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 3   IEKLKEQKEEVETQFLLSD---QVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTN 173
           +E+ KE  +++E   L        F  A+V  T  V + +GAN   E S+  AEK+L   
Sbjct: 34  LERAKEYSKKLEAPILAKICEVGYFCGAHVVRTNQVTMEMGANYYGECSIHTAEKILDRR 93

Query: 174 METAQENLNQVEHDLDFLR 230
           +    E   Q E  LD +R
Sbjct: 94  V---SEMRRQREEGLDSIR 109


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = +3

Query: 3   IEKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWL-GANVMLEYSLEDAEKLLTTNME 179
           I K++++   V       + + ++  V   +S    + G N  LE  ++D    L  N E
Sbjct: 287 IRKIQDESVRVNPDLYKEELISIRTTVTNVRSRLAEVEGRNFFLERLIDD----LKNNEE 342

Query: 180 TAQENLNQVEHDLDF--LRDQCTTTEVNMARVYNWDVKKR 293
                ++  E D     LRDQCT   + M ++ + ++  R
Sbjct: 343 AKFFEISLAERDAQIATLRDQCTELSIQMEKLCDNEISLR 382


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform a protein.
          Length = 1128

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = +3

Query: 3    IEKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWL-GANVMLEYSLEDAEKLLTTNME 179
            I K++++   V       + + ++  V   +S    + G N  LE  ++D    L  N E
Sbjct: 913  IRKIQDESVRVNPDLYKEELISIRTTVTNVRSRLAEVEGRNFFLERLIDD----LKNNEE 968

Query: 180  TAQENLNQVEHDLDF--LRDQCTTTEVNMARVYNWDVKKR 293
                 ++  E D     LRDQCT   + M ++ + ++  R
Sbjct: 969  AKFFEISLAERDAQIATLRDQCTELSIQMEKLCDNEISLR 1008


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform b protein.
          Length = 1248

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = +3

Query: 3    IEKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWL-GANVMLEYSLEDAEKLLTTNME 179
            I K++++   V       + + ++  V   +S    + G N  LE  ++D    L  N E
Sbjct: 913  IRKIQDESVRVNPDLYKEELISIRTTVTNVRSRLAEVEGRNFFLERLIDD----LKNNEE 968

Query: 180  TAQENLNQVEHDLDF--LRDQCTTTEVNMARVYNWDVKKR 293
                 ++  E D     LRDQCT   + M ++ + ++  R
Sbjct: 969  AKFFEISLAERDAQIATLRDQCTELSIQMEKLCDNEISLR 1008


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +3

Query: 114 GANVMLEYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQ 236
           G N++LE  +ED    +  +M + +++LN  +  ++ LRD+
Sbjct: 347 GRNLLLEKQIEDLNYQMEEDMRSYEQSLNDKDTSINKLRDE 387


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +3

Query: 114 GANVMLEYSLEDAEKLLTTNMETAQENLNQVEHDLDFLRDQ 236
           G N++LE  +ED    +  +M + +++LN  +  ++ LRD+
Sbjct: 330 GRNLLLEKQIEDLNYQMEEDMRSYEQSLNDKDTSINKLRDE 370


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 168 TNMETAQENLNQVEHDLDFLRDQCTTTE 251
           T M+TA+E  N++   L  L+DQ T  E
Sbjct: 363 TRMQTAEETANEMRGHLQLLKDQLTNRE 390


>Z81037-1|CAB02745.1|  819|Caenorhabditis elegans Hypothetical
           protein C17E4.2 protein.
          Length = 819

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 120 NVMLEYS-LEDAEKLLTTNMETAQENLNQVEHDLDFL---RDQCTTTEVNMARVYNWDVK 287
           N+ + +  ++   ++L T +E  +    + +  LD +   RD+C   ++ ++R Y  ++K
Sbjct: 38  NLQINFEKIQTENEILKTQLEEKETEAEESQRLLDVIHKDRDECIEEKMKVSRFYRNEIK 97

Query: 288 K 290
           K
Sbjct: 98  K 98


>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 158 FFSIFKTI--LQHYISSKPQAY*LCWWYISLH 69
           FF +  TI  + HYIS   QA+ + W++   H
Sbjct: 273 FFDLINTISYIVHYISLDAQAHVITWYFYCTH 304


>Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical
           protein F32D8.10 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 398 LQMCFVFIMNLLYWSSQHIQLLLNLTSGNATRSCLAFLHIPVVNSSHIHFGSGTLI 231
           L +  VFI    Y +   +++L+N TS    +S      IP++  SHI   S T +
Sbjct: 86  LSLFDVFIA-FAYIAVMSVRILVNFTSSVFLKSIWVHYMIPMLTVSHIGITSSTFL 140


>Z70682-3|CAE46662.1|  187|Caenorhabditis elegans Hypothetical
           protein F08G5.3b protein.
          Length = 187

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/42 (23%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 171 NMETAQENLNQVEHDLDFLRDQCTTTEVNMAR-VYNWDVKKR 293
           NM+T Q+ L++++ +   +RD+    +  +++ +YN D++ +
Sbjct: 80  NMDTIQKLLDEIKREKQLMRDEAHIIKGELSKTMYNEDLRSK 121


>Z70682-2|CAA94582.2|  151|Caenorhabditis elegans Hypothetical
           protein F08G5.3a protein.
          Length = 151

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/42 (23%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 171 NMETAQENLNQVEHDLDFLRDQCTTTEVNMAR-VYNWDVKKR 293
           NM+T Q+ L++++ +   +RD+    +  +++ +YN D++ +
Sbjct: 44  NMDTIQKLLDEIKREKQLMRDEAHIIKGELSKTMYNEDLRSK 85


>Z69716-3|CAA93529.1|  335|Caenorhabditis elegans Hypothetical
           protein C04B4.3 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 15  KEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEY 137
           K++ E + + +   D+VF+K N+   K   L  G+N+  EY
Sbjct: 252 KKEAEFIASIWSKDDEVFLKGNLVWGKQTSLVPGSNIWKEY 292


>Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK792.4b protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 DAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMARVY 272
           D  + + +  E  +  L  +E D+D LRD    TE+++ + +
Sbjct: 423 DVAESIKSEAEIVRHRLRFIEDDIDSLRDTGAQTEMDLLQTH 464


>Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical
           protein ZK792.4a protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 DAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMARVY 272
           D  + + +  E  +  L  +E D+D LRD    TE+++ + +
Sbjct: 438 DVAESIKSEAEIVRHRLRFIEDDIDSLRDTGAQTEMDLLQTH 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,413,915
Number of Sequences: 27780
Number of extensions: 177548
Number of successful extensions: 572
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)