Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l05f
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49510.1 68418.m06127 VHL binding protein, putative / prefold...   102   1e-22
At5g06060.1 68418.m00671 tropinone reductase, putative / tropine...    29   1.2  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    29   1.2  
At2g29330.1 68415.m03562 tropinone reductase, putative / tropine...    28   2.8  
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    28   2.8  
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m...    28   3.7  
At2g29150.1 68415.m03543 tropinone reductase, putative / tropine...    27   6.4  
At3g53120.1 68416.m05854 expressed protein                             27   8.5  
At3g28320.1 68416.m03538 hypothetical protein similar to At14a (...    27   8.5  
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara...    27   8.5  

>At5g49510.1 68418.m06127 VHL binding protein, putative / prefoldin,
           putative similar to Swiss-Prot:Q15765 prefoldin subunit
           3 (Von Hippel-Lindau binding protein 1; VHL binding
           protein-1; VBP-1; HIBBJ46) [Mus musculus]
          Length = 195

 Score =  102 bits (245), Expect = 1e-22
 Identities = 49/98 (50%), Positives = 66/98 (67%)
 Frame = +3

Query: 3   IEKLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMET 182
           +E  K   E +   F +S+ ++ +A +  T SVCLWLGANVMLEYS E+A  LL  N+E 
Sbjct: 84  LEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEASALLKNNLEN 143

Query: 183 AQENLNQVEHDLDFLRDQCTTTEVNMARVYNWDVKKRQ 296
           A+ +L  +  DL FLRDQ T T+V +ARVYNWDV +R+
Sbjct: 144 AKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRR 181


>At5g06060.1 68418.m00671 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 264

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +3

Query: 111 LGANVM---LEYSLEDAEKLLTTNMETAQENLNQVEHDL 218
           +G NV    +EYS E+  K+++TN+E+A  +L+Q+ H L
Sbjct: 97  VGTNVRKPTVEYSSEEYAKIMSTNLESA-FHLSQIAHPL 134


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
           domain-containing protein similar to eukaryotic protein
           synthesis initiation factor [Homo sapiens] GI:3941724;
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 1544

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 144 EDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMAR 266
           EDA  + T  +ETA  ++N      D + D C  TE   +R
Sbjct: 699 EDAADVSTPKLETADNSVNAKRGSSDEVSDNCINTEKKYSR 739


>At2g29330.1 68415.m03562 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 260

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 129 LEYSLEDAEKLLTTNMETAQENLNQVEHDL 218
           +EY  ED   L++TN+E+A  +L+Q+ H L
Sbjct: 104 IEYEAEDFSFLISTNLESAY-HLSQLSHPL 132


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +3

Query: 9   KLKEQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMETAQ 188
           K++  KEE++   L  +    + ++   ++  L  G  + L+  LE+AEK LT   +  Q
Sbjct: 552 KIRSFKEEIDRVNLEIESAEREYDL--NRAAELKYGTLLSLQRQLEEAEKNLTNFRQFGQ 609

Query: 189 ENLNQVEHDLD 221
             L +V  DLD
Sbjct: 610 SLLREVVTDLD 620


>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
           myosin heavy chain (GI:1408194) {Placopecten
           magellanicus}; similar to Myosin heavy chain, clone 203
           (Fragment) (SP:P39922){Hydra attenuata}; contains one
           transmembrane domain
          Length = 323

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +3

Query: 24  KEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVM-LEYSLEDAEKLLTTNMETAQENLN 200
           K + E Q  +++++ V+ ++  ++   + L + ++ L+  L+DAEK++       +E LN
Sbjct: 222 KGKTELQKWITEKMVVEDSLKDSEKKVVALESEIVELQKQLDDAEKMINGLKNVVEEPLN 281

Query: 201 QVE 209
            +E
Sbjct: 282 GIE 284


>At2g29150.1 68415.m03543 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 268

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 132 EYSLEDAEKLLTTNMETAQENLNQVEHDL 218
           EY+ ED   L+ TN+E+A  +L+Q+ H L
Sbjct: 114 EYTAEDYSFLMATNLESA-FHLSQIAHPL 141


>At3g53120.1 68416.m05854 expressed protein
          Length = 217

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
 Frame = +3

Query: 3   IEKLKEQKEEVETQFLLS-DQVFVKANVPPT-KSVCLWLGA-NVMLEYSLEDAEK----L 161
           + KL   K+  + QFLLS DQV V+ N+    +   L L   N+  E  + +       +
Sbjct: 70  LRKLLSDKDAYQ-QFLLSLDQVKVQNNIKDELRRETLQLARDNLEKEPQIMELRNQCRII 128

Query: 162 LTTNMETAQENLNQVE 209
            TT + TAQE LN++E
Sbjct: 129 RTTELATAQEKLNELE 144


>At3g28320.1 68416.m03538 hypothetical protein similar to At14a
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 280

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
 Frame = +3

Query: 99  VCLWLGANVMLEYSLEDAEKLL-------------TTNMETAQENLNQVEHDLDFLRDQC 239
           V  W+G N +L  SLE  +K L             T  ME  +E +  V   +D L+DQ 
Sbjct: 154 VVQWVGVNYVLNNSLEALQKQLKALNKVKPIPERITEGMEADKEGMKSVPEQVDELKDQI 213

Query: 240 TT 245
           ++
Sbjct: 214 SS 215


>At2g42170.1 68415.m05219 actin, putative similar to actin 2
           [Arabidopsis thaliana] gi|9293903|dbj|BAB01806
          Length = 329

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 18  EQKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSLEDAEKLLTTNMETAQENL 197
           E++   E   L +  + +K   PP +   +W+G +++   SL   E++  T  E  +EN 
Sbjct: 264 EERMTKEINALAAANMRIKIVAPPERKYSVWIGGSILA--SLSTYEQMWITKAE-YEENG 320

Query: 198 NQVEH 212
             + H
Sbjct: 321 PAIVH 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,567,174
Number of Sequences: 28952
Number of extensions: 153991
Number of successful extensions: 428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)