Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l04f
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_20150| Best HMM Match : Pox_A32 (HMM E-Value=0.049)                 29   2.9  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)                      27   9.0  

>SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 268 PDASTGRRRVPHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQSVRSISGSGVSHFISRH- 92
           P  S G++R    +S  +SC +T     P E+    +TS ++  ++  G  VSHF   H 
Sbjct: 411 PHVSAGQKR-DETES-EMSCKATGVRGEPSENGEEEDTSSSKESQASGGKSVSHFPPPHF 468

Query: 91  RDDRGQYEQ 65
           + D G+ ++
Sbjct: 469 KHDTGKPQE 477


>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1485

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 235  HVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQS-VRSISGSGVSHFISRHRDDR 80
            H    +  C +TA  +   +  T   + D+ S  R++  S VSH +SRH D R
Sbjct: 960  HTSPGKQLCLATAGGRTADQGSTDCRSGDSASRSRTVQISAVSHGVSRHLDTR 1012


>SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = -2

Query: 542 KKKIRKLRNKYANH*LKKMGRTNFLCKRKNKNFVSLHVNVQNMHFSVPKL 393
           KK++R++R ++ +    +  +T+  C+ +N+    +HV +    F +PK+
Sbjct: 386 KKRLREIREEFGSEICPEFCQTSVECRSRNRILTGMHVRL----FDLPKM 431


>SB_20150| Best HMM Match : Pox_A32 (HMM E-Value=0.049)
          Length = 849

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 259 STGRRRVPHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQS-VRSISGSGVSHFISRHRDD 83
           ST  RR    DS R    + A  +A  +  T   + D+ S  R++  S VSH +SRH D 
Sbjct: 707 STCYRRYRRRDSAR---KAAAGGRAADQGSTACRSGDSASRSRTVQISVVSHGVSRHLDT 763

Query: 82  RG 77
           RG
Sbjct: 764 RG 765


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -1

Query: 495  KKNGENEFFVQTKKQKLRVFACKRPEYAF*RPQTCTVKLNPLRGAFTN*RFTKVKPTPPP 316
            + NGE+E F+Q   +  R+   +  + +   P T       +RG       TK+  TPP 
Sbjct: 1209 RANGESEKFMQILNKTERIATLEGKDKSTPHPATGVTPYEAMRGVSVR---TKLDYTPPT 1265

Query: 315  VRRT 304
              RT
Sbjct: 1266 TERT 1269


>SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -3

Query: 238 PHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQSVRSISGSGVSHFISRHRDDRGQYEQ 65
           P   + R+  S TA +KA   S+  S     +  +S+   GVSHFI R R D+ + E+
Sbjct: 265 PKQIAARILESHTALHKA---SLVESKMMYIRQWQSLPEFGVSHFIVRFRSDKPKKEE 319


>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
          Length = 382

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 410 NAYSGR-LHAKTRSFCFFVCTKNSFSP 487
           N  SGR   + +RSF F +C KN + P
Sbjct: 273 NTMSGRGYQSSSRSFLFTLCNKNGYRP 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,257
Number of Sequences: 59808
Number of extensions: 280899
Number of successful extensions: 830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)