Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l02r
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)                       48   5e-06
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  33   0.28 
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_35463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)
          Length = 369

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 4/152 (2%)
 Frame = -3

Query: 682 WNRYLQEDLSSEKVVMLNVAGCTTDQASLNRFLDAIVSGNDDIRPQDYNAALTSAITSNE 503
           W RY      +EK  ++     T D   L R LD  +     IR QD  + L   ++ + 
Sbjct: 202 WGRYQNSIDPTEKSRIMYALTGTRDVWLLGRLLDYTLD-ESKIRTQDMTSVLAQ-VSGHP 259

Query: 502 INTLRAFQWLRNNVDQATRTLGSVSTILNTIIG---RLLNEE-QINEVSNWLTANQNTLG 335
              L A+   R N D+  R  G  +  L  +I    R  N E  +NE+  ++  +   LG
Sbjct: 260 NGKLLAWDHFRMNFDKIIRRTGKDAMELGYMISGTTRSFNHEFHLNELKQFIKDHDEILG 319

Query: 334 ATYSTALRAIETTRSNLVWSQQRISEFTNYFE 239
           +  ++  +AIET +SN+ W +    E T + +
Sbjct: 320 SLRASK-KAIETIQSNINWMKAHGKEVTKWLQ 350


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 3/153 (1%)
 Frame = -2

Query: 557 Y*TTRLQCCSNLRYYIQ*DKHSESFPMAQEQR*PGDQNPRQRFHDLEHNNWTSPQRGTDK 378
           Y ++ L+C   LR+ +   K    F M ++ +   D         LE   +  P++  + 
Sbjct: 214 YESSGLRCVGKLRFAMP-RKAQLRFAMPRKAQ-VCDALESSGLRWLEKLRFAMPRKAQEC 271

Query: 377 *GFELVDGQPKHPGSHIQHGATSYRDHA--VEPRLVTAENFRIHELLRVRLRGGCH*GDH 204
            G E +D   + P S     ++  R HA   + R  T         +          G  
Sbjct: 272 DGLESLDQLERQPSSPSHSRSSGGRQHACRTQTRQATGRLQSRASGMEANTHSSRTSGME 331

Query: 203 RGTAYCSPDRPTNRSSSCHPCTRFSER-RSPKL 108
             T   +P  P NRS+   P T  S+R RSP L
Sbjct: 332 ANTHSSAPSSPRNRSTRPRPATAASQRERSPSL 364


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = -2

Query: 317 ATSYRDHAVEPRL--VTAENFRIHELLRVRLRGGCH*GDHRGTAYCSPDRPTNRSSSCHP 144
           AT   + A  P L   T+ + R  + +R  LRG       R +   SP+RP++  +S   
Sbjct: 658 ATQEEERATHPSLDRTTSSDSRTSDQVRSDLRGDPRYDSRRRSDVRSPERPSSARNSDTK 717

Query: 143 CT--RFSERRSPKLYHTDHHFSCQFGI 69
            T   + E RSP       +F    GI
Sbjct: 718 ATDQEWKEVRSPDARDARGNFVRDSGI 744


>SB_35463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 652 SEKVVMLNVAGCTTDQASLNRFLDAIVSGNDDIRPQDYNA 533
           SEK + +N    T D   L +FL   + GN+D+  Q ++A
Sbjct: 262 SEKELQVNGHVVTADATFLPQFLSRDIVGNNDVEAQRHDA 301


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/107 (17%), Positives = 36/107 (33%)
 Frame = -3

Query: 544 DYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSN 365
           +YN    +   +  I           N +  T      +T  NT      N E    ++ 
Sbjct: 349 EYNTEYNTEYNTEYITEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYITE 408

Query: 364 WLTANQNTLGATYSTALRAIETTRSNLVWSQQRISEFTNYFESGYVE 224
           ++T         Y+T       T  N  ++ +  +E+ N + + Y E
Sbjct: 409 YITEYNTDYNTDYNTEYNTEYNTEYNTEYNTEYNTEYNNEYNNEYTE 455


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,863
Number of Sequences: 59808
Number of extensions: 400421
Number of successful extensions: 1678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)