Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l02r
         (684 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   3.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.0  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 276 DQTRFDRVVSIARSAVLYVAPRVFWLAVNQFETSFICSSLR 398
           D+TRF+  V +  +  +Y  P    +   +FE   +  ++R
Sbjct: 687 DRTRFEEAVPVDLNPTIYYGPDYTVILDKEFEDDRVAITIR 727


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 548  WSNIVVS*DNRIQESIQTGLVSSTASNVEHYHLLTGQIFLKVAI 679
            WS + V  DN  +  +     S++  +V+H  +   Q+ L V I
Sbjct: 1424 WSYVEVMVDNTNRLEVYISSGSNSTIDVDHLRVFPAQLDLNVHI 1467


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 548  WSNIVVS*DNRIQESIQTGLVSSTASNVEHYHLLTGQIFLKVAI 679
            WS + V  DN  +  +     S++  +V+H  +   Q+ L V I
Sbjct: 1425 WSYVEVMVDNTNRLEVYISSGSNSTIDVDHLRVFPAQLDLNVHI 1468


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,012
Number of Sequences: 2352
Number of extensions: 13544
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)