Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l02r
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z36238-10|CAL63999.1|  287|Caenorhabditis elegans Hypothetical p...    27   9.4  
U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U41553-5|AAO91694.1|  468|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF443190-1|AAL60200.1|  287|Caenorhabditis elegans X-box binding...    27   9.4  

>Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical
           protein F55C9.13 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
 Frame = -3

Query: 421 LNTIIGRLLNEEQINEVSNWLTANQNTLGATYSTALRAIETTRSNL------VWSQQRIS 260
           L T+I  +      NEVS+ L +N N    +   AL  +  +R++L      +W Q+ ++
Sbjct: 79  LRTLIDHIQCVFHTNEVSHLLISNDNHDWKSIHKALDGVNCSRTSLEVHSQNIWLQRIVN 138

Query: 259 EFTNYF 242
           +F++ F
Sbjct: 139 QFSSCF 144


>Z36238-10|CAL63999.1|  287|Caenorhabditis elegans Hypothetical
           protein R74.3b protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = -3

Query: 550 PQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEV 371
           PQ +  A +++I +N  N LR     +NN       L  +S + N  + R    +  N+ 
Sbjct: 180 PQQWEQARSTSINNNISNQLRRMDSKKNNTISVDMYLTIISILCNH-MDRNKKMDTSNKS 238

Query: 370 SNWLTANQNTLGATYSTALRAIETTRSNLV 281
           SN   A   +   +    LR  +T    LV
Sbjct: 239 SNISRAQAESSIDSLLATLRKEQTVMQRLV 268


>U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical
           protein B0261.1 protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/91 (24%), Positives = 38/91 (41%)
 Frame = -3

Query: 526 TSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQ 347
           +S IT +EI  L A    R N  Q    +G+   ++      +++  QIN  S W T  +
Sbjct: 183 SSVITKSEIGDLDAPPAPRINAPQVK--IGADGRLVIDETSLVVHSAQINHESVWETVEE 240

Query: 346 NTLGATYSTALRAIETTRSNLVWSQQRISEF 254
             +GA  ++          +  WS++    F
Sbjct: 241 GRMGAKITSMSFRKRGFGKSSFWSEKETDLF 271


>U41553-5|AAO91694.1|  468|Caenorhabditis elegans Hypothetical
           protein ZK1193.5a protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 433 VSTILNTIIG---RLLNEEQINEVSNWL 359
           V  ++NTII     LLN EQI  V+ WL
Sbjct: 140 VKDVINTIIAGDETLLNSEQIGAVNEWL 167


>AF443190-1|AAL60200.1|  287|Caenorhabditis elegans X-box binding
           protein unprocessedisoform protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = -3

Query: 550 PQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEV 371
           PQ +  A +++I +N  N LR     +NN       L  +S + N  + R    +  N+ 
Sbjct: 180 PQQWEQARSTSINNNISNQLRRMDSKKNNTISVDMYLTIISILCNH-MDRNKKMDTSNKS 238

Query: 370 SNWLTANQNTLGATYSTALRAIETTRSNLV 281
           SN   A   +   +    LR  +T    LV
Sbjct: 239 SNISRAQAESSIDSLLATLRKEQTVMQRLV 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,494
Number of Sequences: 27780
Number of extensions: 288889
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)