Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l02r
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ...    31   0.71 
At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger) fa...    30   1.2  
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode...    29   2.9  
At2g02650.1 68415.m00204 reverse transcriptase-related similar t...    29   3.8  
At1g47560.1 68414.m05279 expressed protein                             29   3.8  
At1g47550.1 68414.m05278 expressed protein                             29   3.8  
At5g57610.1 68418.m07197 protein kinase family protein similar t...    28   5.0  
At1g03390.1 68414.m00319 transferase family protein similar to a...    28   5.0  
At4g32300.1 68417.m04596 lectin protein kinase family protein co...    27   8.8  
At4g00360.1 68417.m00050 cytochrome P450, putative                     27   8.8  

>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
            (UBP16) similar to ubiquitin-specific protease 16
            GI:11993477 [Arabidopsis thaliana]
          Length = 1008

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = -2

Query: 212  GDHRGTAYCSPDRP---TNRSSSCHPCTRFS--ERRSPKLYHTDHH 90
            GDH+G A+   + P   ++ SSS  P TR S   R SP+ Y T  H
Sbjct: 955  GDHQGRAHGQSETPSPTSSSSSSSPPFTRRSPLSRSSPETYGTSRH 1000


>At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 340

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 572 DNRIQESIQTGLVSSTASNVEHYHLLTGQIFLKVAIP 682
           D R+ E+ QTG+VS T S  E      G+  + VA+P
Sbjct: 28  DGRLPENRQTGVVSDTGSGSERGEQGVGESAVAVAVP 64


>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
           protodermal factor 2 (PDF2) identical to GP|14276060|
           protodermal factor2 (GI:14276060)
          Length = 743

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = -3

Query: 583 DAIVSGNDDIRPQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTII 407
           D  V G D  + Q+  +  +S      + T+ AFQ L ++V  A  +LGSV+T+ N++I
Sbjct: 668 DGSVGGGDGNQHQEMVSTTSSGSCGGSLLTV-AFQILVDSVPTAKLSLGSVATV-NSLI 724


>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278
          Length = 365

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 382 INEVSNWLTANQNTLGATYSTALRAIETT-RSNLVWSQQRISEFTNYFESGYVE 224
           I + + WL AN+ T       A   I+T+ R +  W+          F+SGY +
Sbjct: 171 IQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQ 224


>At1g47560.1 68414.m05279 expressed protein
          Length = 887

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 481 QWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNT 341
           QW   N D   R L  +  I   ++GRL     I+ V   L A  NT
Sbjct: 123 QWTMRNTDDRNRLLVCILNICKDVLGRLPKVVGIDIVEMALWAKDNT 169


>At1g47550.1 68414.m05278 expressed protein
          Length = 887

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 481 QWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNT 341
           QW   N D   R L  +  I   ++GRL     I+ V   L A  NT
Sbjct: 123 QWTMRNTDDRNRLLVCILNICKDVLGRLPKVVGIDIVEMALWAKDNT 169


>At5g57610.1 68418.m07197 protein kinase family protein similar to
           protein kinase [Glycine max] GI:170047, MAP3K delta-1
           protein kinase [Arabidopsis thaliana] GI:2253010;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1054

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 401 SPQRGTDK*GFELVDGQPKHPGSHIQHGATSYRDHAVEPRLVTAENFRIH-ELLRVR 234
           SPQR +   G   + GQP +P  H+Q      R   ++P  V +EN  +H E L+VR
Sbjct: 557 SPQRISGFDGMSSL-GQPSYPNPHLQD-----RAFPLDPNWVPSENPTVHNEHLQVR 607


>At1g03390.1 68414.m00319 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase from
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 461

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 559 DIRPQDYNAALTSAI-TSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGR 401
           D++P DYN  LT ++     + TL+  +    NV      + SV +++N  + +
Sbjct: 294 DVKPLDYNLRLTFSVNVRTRLETLKLRKGFYGNVVCLACAMSSVESLINDSLSK 347


>At4g32300.1 68417.m04596 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 821

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -2

Query: 257 IHELLRVRLRGGCH*GDHRGTAY 189
           IH L  VRLRG C  G HR  AY
Sbjct: 543 IHHLHLVRLRGFCAEGAHRLLAY 565


>At4g00360.1 68417.m00050 cytochrome P450, putative 
          Length = 553

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 388 EQINEVSNWLTANQNTLGATYSTALRAI 305
           EQ + + +W+T N    G TY T + A+
Sbjct: 44  EQRDRMHDWITENLRACGGTYQTCICAV 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,247,804
Number of Sequences: 28952
Number of extensions: 267847
Number of successful extensions: 782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)