Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l02f
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   5.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   7.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.2  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 301 VNVCYCGRSVNS 266
           ++VC CG SV+S
Sbjct: 209 ISVCLCGASVHS 220


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 498 FPLKVLLIMYSLLS 457
           FPL +L+I+Y L++
Sbjct: 248 FPLAILIIVYILIA 261


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   LLLFRLTSVIMASRWFYFLVGV 67
           LLLF++TSV++A     ++  V
Sbjct: 714 LLLFKITSVMIAVSGLVYIATV 735


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -3

Query: 442 GSDSKETERHLTGESLAGRCYI 377
           G     + RHL    +AG C++
Sbjct: 331 GPGPARSRRHLPAHLVAGTCFV 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,014
Number of Sequences: 336
Number of extensions: 3001
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)