Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l02f
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 38 0.007
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 36 0.029
03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192... 32 0.27
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 32 0.36
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 31 0.82
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 30 1.1
03_02_0532 + 9255634-9257034,9257234-9257347,9257975-9258239,925... 30 1.1
05_06_0250 - 26682207-26683811 30 1.4
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 30 1.4
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 28 4.4
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 28 4.4
11_08_0070 + 28152109-28152717 27 7.7
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 27 7.7
03_05_0341 + 23300588-23300710,23300958-23301363,23301463-233016... 27 7.7
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 27 7.7
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 37.5 bits (83), Expect = 0.007
Identities = 43/149 (28%), Positives = 60/149 (40%)
Frame = +2
Query: 92 LSPIPVPEDEWVEFARMLRDPAFRLPTTTRPRHYQVTLTPYFDVVPANVNPFTFDGEVTI 271
++P P P +F R A RLP PR Y++ L P D FT D V +
Sbjct: 1 MAPAPAPAGSADQF----RGQA-RLPRFAAPRRYELRLRPDLDAC-----VFTGDASVVV 50
Query: 272 YTSPTVANVNEVVIHCNDLTIQSLSIGYQSGTNVVDITATGQTFACEMPFSFLRIRTTEA 451
S A +V++ DL + SI +Q G +++ L +
Sbjct: 51 DVS---APTRFLVLNAADLAVDRASIRFQ-GLAPTEVSLFEDD-------EILVLEFDGE 99
Query: 452 LVLNREYIIKSTFRGNLQTNMRGFYRSWY 538
L L E ++ F G L MRGFYRS Y
Sbjct: 100 LPLG-EGVLAMDFNGTLNDQMRGFYRSKY 127
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 35.5 bits (78), Expect = 0.029
Identities = 34/126 (26%), Positives = 54/126 (42%)
Frame = +2
Query: 161 RLPTTTRPRHYQVTLTPYFDVVPANVNPFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQS 340
RLP PR Y++ L P ++ F GE ++ + A +V++ DL +
Sbjct: 13 RLPRFAAPRRYELRLRP-------DLAACVFSGEASVAVDVS-APTRFLVLNAADLAVDR 64
Query: 341 LSIGYQSGTNVVDITATGQTFACEMPFSFLRIRTTEALVLNREYIIKSTFRGNLQTNMRG 520
SI +Q G +++ + + F+ L L E ++ F G L MRG
Sbjct: 65 ASIRFQ-GLAPAEVSVFEEDEILVLEFA-------GELPLG-EGVLAMRFNGTLNDQMRG 115
Query: 521 FYRSWY 538
FYRS Y
Sbjct: 116 FYRSKY 121
>03_05_0612 +
26117306-26118045,26118151-26118680,26119247-26119278,
26119910-26121175
Length = 855
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 92 LSPIPVPEDEW--VEFARMLRDPAFRLPTTTRPRHYQVTLTPYF 217
L P P+P DE ++ A ++ DPA PRHY+V LTP F
Sbjct: 126 LPPRPLPRDEMDRIDAAYLVFDPA------VSPRHYEVFLTPSF 163
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 31.9 bits (69), Expect = 0.36
Identities = 33/126 (26%), Positives = 50/126 (39%)
Frame = +2
Query: 161 RLPTTTRPRHYQVTLTPYFDVVPANVNPFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQS 340
RLP PR Y + L P D F G V + T A +V++ +L +
Sbjct: 16 RLPGFAAPRRYDLRLVPDLDGC-------AFTGSVDVSVDVT-APTRFLVLNAAELEVSP 67
Query: 341 LSIGYQSGTNVVDITATGQTFACEMPFSFLRIRTTEALVLNREYIIKSTFRGNLQTNMRG 520
+ ++ ++ T E L IR E L + ++ + F+G L M G
Sbjct: 68 GGVQFKPHGAEQELHPAEVTNVPED--EILIIRFNEVLPVGEGTLVIA-FKGTLNDKMHG 124
Query: 521 FYRSWY 538
FYRS Y
Sbjct: 125 FYRSVY 130
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 30.7 bits (66), Expect = 0.82
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 467 EYIIKSTFRGNLQTNMRGFYRSWY 538
E ++K F G L MRGFYRS Y
Sbjct: 94 EGVLKMDFTGTLNDQMRGFYRSKY 117
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 245 FTFDGEVTIYTSPTVANVNEVVIHCNDLTIQSLSIGYQSGTNV 373
+TFDG YTS V +N V H N+ +SI G ++
Sbjct: 710 YTFDGSPVGYTSSPVETINYVSAHDNETLFDIVSIKTPIGLSI 752
>03_02_0532 +
9255634-9257034,9257234-9257347,9257975-9258239,
9258346-9258461
Length = 631
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 233 WLVQHRNMESVLLDNVSGVWSLEDETPDPEASSQIQPTHLLVL 105
++ HR ++ VL D++ GV + D PDP ++ THL L
Sbjct: 277 YVAVHRELKGVLWDDIQGVDVVTDNLPDPALAN---ATHLCFL 316
>05_06_0250 - 26682207-26683811
Length = 534
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +2
Query: 80 TSLTLSPIPVPEDEWVEFARMLRDPAFRLPTTTRPRHYQVTLTPYFDVVPANVNPFTFDG 259
TSLTL+ +P + + R+L LP++TRP Y+ T + ++ FDG
Sbjct: 226 TSLTLANCTIPPLQGFQALRIL--VLQHLPSSTRPADYESVFTSCTQLRVLHLKSCMFDG 283
Query: 260 EVTIYTSPTVANVNEVVIHC 319
+ + +P + V HC
Sbjct: 284 VLRV-NAPCSSIEQLVFDHC 302
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -1
Query: 558 LLPVLSTYQLL*KPLMLVCRFPLKVLLIMYSLLSTKASVVLILRKLKGISQAKV 397
++ L + ++ + LVCR L +L +S L+T S IL +LKGI ++V
Sbjct: 712 IMSYLKEWSMVPLKVELVCRVCLVLLQTHHSQLTTTPSARSILTELKGILYSRV 765
>09_02_0053 -
3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 172 RWKTKRRIPKHPRKFNPLI 116
RW+ + R +HPRK+ PL+
Sbjct: 292 RWRRRIRNRRHPRKYGPLV 310
>05_06_0020 +
24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 156 AGSRSILANSTHSSSGTGMGLNVSEVCKKATPTRK*NQRDAIITLV 19
A S LA+S +S G N+S+ + TP R NQR+ I+++
Sbjct: 560 ANSPVFLADSVAASGTHSRGNNLSDSKNRMTPNRGKNQRNKGISII 605
>11_08_0070 + 28152109-28152717
Length = 202
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 191 YQVTLTPYFDVVPANVNPFTFDGEVTIYTSPTVANVN 301
Y V+L F+V PA + P FDG T A++N
Sbjct: 112 YSVSLVDGFNV-PATITPHAFDGSQTCPVLGCAADIN 147
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 107 VPEDEWVEFARMLRDPAFRLPTTTR 181
+PE EW +F MLR P LP T R
Sbjct: 72 IPEGEWDDFMNMLRKP---LPATFR 93
>03_05_0341 +
23300588-23300710,23300958-23301363,23301463-23301671,
23301944-23302298,23302392-23302630,23303777-23304055
Length = 536
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 139 DASGSGVSSSNDHTPETLSSNTDSIFRCCTSQRE 240
D S SSSND T + S NT+++ C+S +
Sbjct: 142 DPVDSSGSSSNDTTQSSRSRNTENLTAMCSSSEK 175
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 260 EVTIYTSPTVANVNEVVIHCNDLTIQSLSIG 352
E + P VAN E V+ +DL++ + SIG
Sbjct: 312 EAAVQEDPGVANATEGVVTVDDLSLHAKSIG 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,747,559
Number of Sequences: 37544
Number of extensions: 310124
Number of successful extensions: 912
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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