Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l02f
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                54   8e-08
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                44   8e-05
SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          33   0.12 
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 31   0.84 
SB_37656| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 29   3.4  
SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20)        29   3.4  
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 28   4.5  
SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)                     28   4.5  
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             28   4.5  
SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)           28   4.5  
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)          28   5.9  
SB_26047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_49327| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   7.9  
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)                    27   7.9  

>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 43/161 (26%), Positives = 71/161 (44%)
 Frame = +2

Query: 62  GVAFLQTSLTLSPIPVPEDEWVEFARMLRDPAFRLPTTTRPRHYQVTLTPYFDVVPANVN 241
           GV+    S T  P P+  + W +          RLPT   P HY + L P       N+ 
Sbjct: 70  GVSTTAVSPTTKPNPLGPEPWYKV---------RLPTNVIPVHYDLFLHP-------NLT 113

Query: 242 PFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQSLSIGYQSGTNVVDITATGQTFACEMPF 421
             TF+GEV I     +     +++H N +T+   S+   +  +  +  A  + F  +  F
Sbjct: 114 TGTFEGEVEILVD-VLQETEYILVHTNGMTVSKSSVHEATKESQKEPLAVKEMFEYKENF 172

Query: 422 SFLRIRTTEALVLNREYIIKSTFRGNLQTNMRGFYRSWYVD 544
            ++ I + E L + R YI++  +R    + + GFY S Y D
Sbjct: 173 YYVFIMS-EKLSVGR-YIVRMDYRAPFSSELNGFYLSTYKD 211


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 36/131 (27%), Positives = 53/131 (40%)
 Frame = +2

Query: 161 RLPTTTRPRHYQVTLTPYFDVVPANVNPFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQS 340
           RLP++  P  Y V L P  D        FTF G V++       + + + IH   + +  
Sbjct: 132 RLPSSVTPEEYTVILRPKLDP------DFTFSGNVSVRVKCN-EDTDYIFIHAKQMRLTK 184

Query: 341 LSIGYQSGTNVVDITATGQTFACEMPFSFLRIRTTEALVLNREYIIKSTFRGNLQTNMRG 520
             +  Q G   + I  T      EM FS   I+    L     Y+++  F   L   + G
Sbjct: 185 FEVLNQ-GKEPLKIMETANCEKLEM-FS---IKVKGGLKKGESYVLQIDFNAVLAEKLTG 239

Query: 521 FYRSWYVDSTG 553
           FY+S Y D  G
Sbjct: 240 FYKSSYKDKDG 250


>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 27/96 (28%), Positives = 41/96 (42%)
 Frame = +2

Query: 62  GVAFLQTSLTLSPIPVPEDEWVEFARMLRDPAFRLPTTTRPRHYQVTLTPYFDVVPANVN 241
           GV+    S T  P P+  + W +          RLPT   P HY + L P       N+ 
Sbjct: 45  GVSTTAVSPTTKPNPLGPEPWYKV---------RLPTNVIPVHYDLFLHP-------NLT 88

Query: 242 PFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQSLSI 349
             TF+GEV I     +     +++H N +T+   S+
Sbjct: 89  TGTFEGEVEILVD-VLQETEYILVHTNGMTVSKSSV 123


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
 Frame = -3

Query: 343 EALNGQVVAVDNNFVNVC-YCGRSVNSNFAVKS-EGVHVGWYNIEIWSQCYLI-----MS 185
           EA + Q    D   V VC + GR++NS+FA K+   + VG +   ++S  Y++     M+
Sbjct: 161 EAADAQTGGPDRAQVTVCQHPGRTINSDFAAKNCREILVGLFWFGLFSSEYVLRNYSSMA 220

Query: 184 RACGRWKTKRRIPKH-PRKFNPLIFWYW 104
               + K  R +PK+ PR+   +I   W
Sbjct: 221 YRILKGKVVRSLPKNLPRRVKVMIARAW 248


>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 904

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
 Frame = +2

Query: 161 RLPTTTRPRHYQVTLTPYFDVVPANVNPFTFDGEVTIYTSPTVANVNEVVIHCNDLTIQS 340
           RLP    P HY V    Y +++   +    F G   I+ + T  + + +++H   + + S
Sbjct: 240 RLPKNVVPVHYNV----YLNII---LKELRFTGTSEIHLNVT-QSTDLILVHSARMNVTS 291

Query: 341 LSIGYQSGTNVVDITATGQTFACEM-PFSFLRIRTTEALVLNREYIIKSTFRGNLQTNMR 517
            S+  ++G    D  A  + F  E   F+ L++ T    +    Y++   F   L   + 
Sbjct: 292 GSVMNKAG----DQQAIKKRFWFEKNQFTVLQMETA---LEPGPYVVMLGFEAFLSDQLN 344

Query: 518 GFYRSWYVDSTGR 556
           G YRS Y    G+
Sbjct: 345 GLYRSQYTHKDGK 357


>SB_37656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 476 IKSTFRGNLQTNMRGFYRSWYVD 544
           +K  F G L   M+GFYRS Y+D
Sbjct: 58  LKLDFTGELNDKMKGFYRSKYMD 80


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 470 YIIKSTFRGNLQTNMRGFYRSWYVDSTGR 556
           Y++  +++G     +RGFYRS +  + G+
Sbjct: 194 YVVSISYKGFYSKGLRGFYRSSFTQNNGQ 222


>SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20)
          Length = 360

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 340 PLNWLPKWNECGRYNSD 390
           P N+ P  NECG YNS+
Sbjct: 76  PYNYTPVTNECGNYNSE 92


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 158  FRLPTTTRPRHYQVTLTPYFDVVPANVNPFTFDGEVTIYTSPTVANVNEVVIHC 319
            FRLPT   P +Y +    Y DV   N+    + G V I  + T  + + V++HC
Sbjct: 1445 FRLPTNVIPNNYDL----YLDV---NMKKKNYTGSVNILVTVT-QSTDLVILHC 1490


>SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 158 FRLPTTTRPRHYQVTLTPYFDVVPANVNPFTFDGEVTIYTSPTVANVNEVVIHC 319
           FRLPT   P +Y +    Y DV   N+    + G V I  + T  + + V++HC
Sbjct: 31  FRLPTNVIPNNYDL----YLDV---NMKKKNYTGSVNILVTVT-QSTDLVILHC 76


>SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)
          Length = 965

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 293 NVNEVVIHCNDLTIQSLSIGYQSGTNVVDITAT 391
           N+N++V+   D  ++  +I ++SG+ VVD+  T
Sbjct: 172 NINQLVVDTLDSCLRDFNITFRSGSVVVDVMYT 204


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 286 CGRSVNSNFAVKSEGVHVGWYNIEIWSQCYLIMS 185
           CG  +   F +   G HV WY+    S  Y++MS
Sbjct: 395 CGVPMYHRFHMPDNGNHVWWYSFNYGSLHYIMMS 428


>SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)
          Length = 362

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 211 WSQCYLIMSRACGRWKTKRR 152
           W +C  I  + CG+W T+R+
Sbjct: 314 WRRCIKIWKKICGKWHTQRQ 333


>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
          Length = 495

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 242 GSRWLV--QHRNMESVLLDNVSGVWSLEDET 156
           G RWL+  QH N +S+     SG W LE+ T
Sbjct: 429 GRRWLLLKQHENDDSLNSAYASGYWKLENIT 459


>SB_26047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 170 TTTRPRHYQVTLTPYFDVVPANVNPFTFDGEVTIYTSPTVANVNEVVI 313
           +T  P    + LTP+F+ +PAN     F+  VT+  S    +++ VV+
Sbjct: 18  STAVPIIESLVLTPHFERIPANTFA-EFEASVTVNRSGNFFDLDSVVL 64


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 215  NMESVLLDNVSGVWSLEDETPDPEASSQIQPT 120
            N  S ++  V+G+W ++D+TP   A+ +++ T
Sbjct: 1445 NRLSGMMSIVNGLWKVQDDTPTSIATPEVEIT 1476


>SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 464 REYIIKSTFRGNLQTNMRGFYRSW 535
           RE++ KST  GN   N R   RSW
Sbjct: 125 REWVDKSTNEGNWSPNARQITRSW 148


>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +2

Query: 305 VVIHCNDLTIQSLSIGYQSGTNVVDITATGQTFACEMPFSFLRIRTTEALVLNREYIIKS 484
           V  H   +   S   G  +G N++   A    F  E+PF  + +R   +LVL    +  +
Sbjct: 474 VSAHSKAVIRLSTESGDNAGKNIIVCLAVLGVFIAEIPFRSIIVRHLVSLVLATNGLKVT 533

Query: 485 TFRGNLQ 505
            +R N++
Sbjct: 534 DYRQNMK 540


>SB_49327| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1196

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 215 NMESVLLDNVSGVWSLEDETPDPEASSQIQPT 120
           N  S ++  V+G+W ++D+TP   A+ +++ T
Sbjct: 52  NRLSGMMSIVNGLWKVQDDTPTSIATPEVEIT 83


>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
          Length = 848

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 194 DNVSGVWSLEDETPDPEASSQIQPT 120
           D +  ++ +  ETP+PEA+ Q Q T
Sbjct: 1   DKIDSLFKVSPETPEPEAADQKQDT 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,310,904
Number of Sequences: 59808
Number of extensions: 372525
Number of successful extensions: 1266
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)