Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l02f
         (558 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasm...    25   1.3  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    24   2.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   5.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   5.1  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   9.0  

>DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasmic
           carbonic anhydrase protein.
          Length = 276

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 439 SDSKETERHLTGESLAGRCYIYH 371
           SDS+ +E  + GES AG  ++ H
Sbjct: 101 SDSRGSEHTVDGESFAGELHLVH 123


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 480 LIMYSLLSTKASVVLILRKLKGISQAKVWPVAVISTTFVPLW*PIERL 337
           L + S +S K S+   L+ L    Q+ +WPV++    FV    P +R+
Sbjct: 295 LDLMSFISFKVSIPKSLKDLA--LQSTIWPVSLTVREFVDRGLPKQRI 340


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 253 KSEGVHVGW-YNIEIWSQCYLIMSRACGRWK 164
           K   +  G  + + I  QC  ++ R  GRWK
Sbjct: 810 KDSSIRAGHDFLLAIQEQCVTVIERQQGRWK 840


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 253 KSEGVHVGW-YNIEIWSQCYLIMSRACGRWK 164
           K   +  G  + + I  QC  ++ R  GRWK
Sbjct: 811 KDSSIRAGHDFLLAIQEQCVTVIERQQGRWK 841


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
            topoisomerase protein.
          Length = 1039

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = -1

Query: 153  GSRSILANSTHSSSGTG-----MGLNVSEVCKKATPTRK 52
            G+ S ++N+T+SSS +G      G N S+  K  +P  K
Sbjct: 958  GAGSTISNNTNSSSSSGKKSSHSGTNSSKRKKTVSPGEK 996


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,347
Number of Sequences: 2352
Number of extensions: 11390
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52142868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)