Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l01r
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   234   7e-63
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   234   7e-63
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.33 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.3  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   3.1  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   4.1  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.4  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.4  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   9.4  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  234 bits (572), Expect = 7e-63
 Identities = 104/167 (62%), Positives = 137/167 (82%)
 Frame = -2

Query: 502 MSSLKLQKRLAASVMRCGKXKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 323
           M++L+ QKRLAASV++CGK KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 322 ARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRTAKKIDRHLY 143
            R+RK   A+R GRH G+GKR+GTA A MP   +W++RQRVLR+L  KYR + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 142 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVK 2
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR + K
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAK 167


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  234 bits (572), Expect = 7e-63
 Identities = 104/167 (62%), Positives = 137/167 (82%)
 Frame = -2

Query: 502 MSSLKLQKRLAASVMRCGKXKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 323
           M++L+ QKRLAASV++CGK KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 322 ARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRTAKKIDRHLY 143
            R+RK   A+R GRH G+GKR+GTA A MP   +W++RQRVLR+L  KYR + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 142 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVK 2
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR + K
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAK 167


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 300 SVFLRTRAREWTATGFLMTRPSLIILRMFC 389
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 380 DVLSGVGVCDLIDFIWIQPHLXFTTSHNRGCK 475
           +VLS +    ++D  +  PHL   +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 520 GSHRVRMSSLKLQKRLAASVMRCGKXKVWLDPNEINEI 407
           G  +++    K  K L +S+        W D NE+NE+
Sbjct: 9   GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 63  AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 155
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = -2

Query: 442 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 296
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 295 RRKGR 281
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 388 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 272
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 23  LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 133
           LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 196 RKLXLKYRTAKKIDRHLYHSLYMKAKGNVFKN 101
           + + ++Y      +R +Y SLY KAK  V  N
Sbjct: 762 KTVKIEYLDFSDSERKIYDSLYTKAKSTVNAN 793


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 259 FSYQSHSDDPFYVPLCFCGHGR 324
           FS  + +D+P Y P+  CG G+
Sbjct: 37  FSQCAITDEPLYPPIVSCGLGK 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,554
Number of Sequences: 5004
Number of extensions: 45234
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)