Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l01r
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              283   8e-77
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)                 29   3.2  
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)                        29   3.2  
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)                        29   3.2  
SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79)                   29   3.2  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        28   4.2  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          28   4.2  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   5.5  
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)                    27   7.3  
SB_14142| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)        27   9.6  
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  283 bits (693), Expect = 8e-77
 Identities = 129/170 (75%), Positives = 150/170 (88%)
 Frame = -2

Query: 511 RVRMSSLKLQKRLAASVMRCGKXKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 332
           +V + +L+LQKRLAAS+++CGK K+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 331 HSRARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRTAKKIDR 152
           HSRARVRK  EAR KGRH G GKR+GTANA MPQK +W++R RVLR+L  KYR AKKID 
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDN 145

Query: 151 HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVK 2
           H+YHSLYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQAEARRNK K
Sbjct: 146 HMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNK 195


>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
          Length = 352

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = +2

Query: 236 HTRIGSTSSLTKATVTTLST----CLCVFADTGAGVDCYRFLDDETILDHLTD-VLSGVG 400
           +T +G  S+    T+T LS     CL +    G        +  +  L   T+ +L+ + 
Sbjct: 5   NTSVGYNSTSAGFTITDLSLLPAYCLAISVGLGGNGLVIGVVRKKRSLHTTTNYLLANLA 64

Query: 401 VCDLIDFIWIQPHLXFT-TSHNRG 469
           + DL++ IW  P L  T   H RG
Sbjct: 65  LADLLNLIWCIPGLVLTFVEHPRG 88


>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -2

Query: 214 QRQRVLRKLXLKYRTAKKIDRHLYHSLYMK---AKGNVFKNKRVLMEYIHRKK 65
           Q Q+ + KL    +  +K   +L   + ++   AK NV KNKR+ ++ + RKK
Sbjct: 28  QTQQAIWKLRETEKLLEKKQEYLEQRIEIETNTAKANVKKNKRIALQALKRKK 80


>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -2

Query: 214 QRQRVLRKLXLKYRTAKKIDRHLYHSLYMK---AKGNVFKNKRVLMEYIHRKK 65
           Q Q+ + KL    +  +K   +L   + ++   AK NV KNKR+ ++ + RKK
Sbjct: 28  QTQQAIWKLRETEKLLEKKQEYLEQRIEIETNTAKANVKKNKRIALQALKRKK 80


>SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79)
          Length = 296

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = -2

Query: 370 IKDGLVIKKPVAVHSRA-RVRKNTEARRKG--RHCGFGKRRGTANAXMPQKELWVQRQRV 200
           IK GL++K  + + ++  R  +N  +R  G  R     K+       M      VQR + 
Sbjct: 55  IKIGLLVKNRITLQTKTNRCFENAASRYNGIDRMSSHNKKLKREKQDMASA---VQRTKG 111

Query: 199 LRKLXLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 86
           +R L  + R   +  ++L++ L ++A  N+F    VLM
Sbjct: 112 IRSLSKESREKLEAYQNLFYLLQLEAYLNLFYLLHVLM 149


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 30/120 (25%), Positives = 49/120 (40%)
 Frame = -2

Query: 403 NTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANAXMPQKE 224
           N +SRQ I K IK    + + V VH +  +++       G      K  G + +    K+
Sbjct: 500 NGSSRQAIEKYIKANYKVGESVGVHLKMALKRAV----AGGSILQTKGVGASGSFKLAKK 555

Query: 223 LWVQRQRVLRKLXLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTK 44
             V +++V +K+  K   AK     +      KAK    K  +   +    KKA+K   K
Sbjct: 556 AEVPKKKVTKKVAKKKPAAKPKKASVKKPAAKKAKSPKKKAAKKPAKKSTPKKAKKPAAK 615


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 196 LEPFVFVPIVPSVAYX--HWQYLFSYQSHSDDPFYVPLCFCGH 318
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 196 LEPFVFVPIVPSVAYX--HWQYLFSYQSHSDDPFYVPLCFCGH 318
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/111 (20%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
 Frame = -2

Query: 460 MRCGKXKVWLDPNEINE--IANTNSRQ---NIRKM------IKDGLVIKKPVAVHSRARV 314
           +R G+ ++ + P +  +  +   N+R+   N+RK+      ++  LV ++P+    R R 
Sbjct: 431 IRSGEKRIVIHPRKDKKRFLVRVNNRRKPFNLRKIPPNLSGLRRFLVRRRPIRRQRRRRR 490

Query: 313 RKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRTAKK 161
           R+    RR+ R     +RR        ++    +++R LR+  L+ +  ++
Sbjct: 491 RRRRRRRRQRRRRRRRRRRNRRKRRRRKRRTARRKRRELRRRRLRMKRGRR 541



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
 Frame = -2

Query: 325  RARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRTAKKI-DRH 149
            R R+R+    +R+ R     +RR        ++  +  R+R++R+  LK R  +++  R+
Sbjct: 1469 RRRIRRRRRRKRRRRRRRRRRRRRQQKRQRRKQRRYQHRRRLIRR--LKRRVLRRLRRRY 1526

Query: 148  LYHSLYMKAKG--NVFKNKRVLME-YIHRKKAEKARTK 44
               ++Y   KG  +     RV  E Y H KK    + K
Sbjct: 1527 TKTAVYFIQKGVKHAVYWSRVKSEFYYHAKKGGFKKVK 1564


>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
          Length = 461

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
 Frame = -2

Query: 388 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQR 209
           +  RK++K  L     V    ++++ K+ EA+   +    GK++    A   + +  V +
Sbjct: 143 EKTRKVLKSKL---DKVEKKKKSKLGKSKEAKNSKKSV-VGKKKHEKKAESKKADKKVSK 198

Query: 208 QRVLRK----LXLKYRTAK---KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKAR 50
           + VL K    + + ++T K   KI + L H L  K+K + +      +      K  K  
Sbjct: 199 KVVLMKGVQTVTIDHKTMKIIKKIPKSLLHKLLKKSKLDKYLKLASFLSIEGNVKKMKKG 258

Query: 49  TKMLSDQAEARRNKV 5
           +K   D A+ +   V
Sbjct: 259 SKQAKDSAKRKTTVV 273


>SB_14142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 24/102 (23%), Positives = 48/102 (47%)
 Frame = -2

Query: 394 SRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWV 215
           S++N++   ++GL+ K+ +  H    +RK     R+       KR       +  K    
Sbjct: 171 SKRNLQH--REGLISKRDLQ-HRERLIRKRNLQHREML---ISKRNLQHRERLISKRNLQ 224

Query: 214 QRQRVLRKLXLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVL 89
            R+R++RK  L++R      R+L H   + +K N+   +R++
Sbjct: 225 HRERLIRKRNLQHREMLISKRNLQHREGLISKRNLQHRQRLI 266


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
 Frame = -2

Query: 412 EIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANAXMP 233
           ++  T  ++ I  +I    ++    ++   +R       RR         RR  + +  P
Sbjct: 83  KLIKTRRKERIENIIDYPAMLYGSASLAKISRNASPANPRRSPAPYNSPSRRSKSTSRSP 142

Query: 232 QKELW--VQRQRVL----RKLXLKYRTAKKIDRHLYHSLYMKAKGNVF-KNKRVLMEYIH 74
            KE W   +R+RV+    R + ++YR  + +D ++  S   +   +    N R L  Y  
Sbjct: 143 SKERWSKFKRERVVAYEERNIAVEYRVERGVDVNMEISHRPRTNSSSSDNNNRQLSLYNP 202

Query: 73  RKKAEK 56
            K ++K
Sbjct: 203 DKPSDK 208


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 27/110 (24%), Positives = 42/110 (38%)
 Frame = -2

Query: 331  HSRARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRTAKKIDR 152
            H+ +  R+  + RRK +     KRR        +K    +++R  RK   K +  +K  R
Sbjct: 1025 HAGSHERRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKR 1084

Query: 151  HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVK 2
                    K K    + KR       R++  K R K    +   RR K K
Sbjct: 1085 RRKRKRRRKRKR---RRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRK 1131


>SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)
          Length = 427

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 467 GCKPLLQLEGTHPDTVRSNAH 529
           GCKP L     HPDT +  A+
Sbjct: 336 GCKPFLMTPFPHPDTPKQEAY 356


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 325 RARVRKNTEARRKGRHCGFGKRRGTANA 242
           +A  RK    RR+ R  G  K+R TANA
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANA 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,699,248
Number of Sequences: 59808
Number of extensions: 376310
Number of successful extensions: 1048
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)