Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l01r
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 243 5e-65
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 242 9e-65
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 242 9e-65
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 52 2e-07
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 30 0.84
At5g24430.1 68418.m02879 calcium-dependent protein kinase, putat... 29 2.6
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 2.6
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 2.6
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 3.4
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 4.5
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 4.5
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 27 5.9
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 5.9
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 27 7.9
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 243 bits (595), Expect = 5e-65
Identities = 111/167 (66%), Positives = 134/167 (80%)
Frame = -2
Query: 502 MSSLKLQKRLAASVMRCGKXKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 323
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 322 ARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRTAKKIDRHLY 143
+R R EA+RKGRH G+GKR+GT A +P K LW++R RVLR+ KYR +KKIDRH+Y
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120
Query: 142 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVK 2
H +YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ EA+R K K
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNK 167
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 242 bits (593), Expect = 9e-65
Identities = 111/167 (66%), Positives = 135/167 (80%)
Frame = -2
Query: 502 MSSLKLQKRLAASVMRCGKXKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 323
M SLKLQKRLA+SV++CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 322 ARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRTAKKIDRHLY 143
+R R+ A+RKGRH G+GKR+GT A +P K LW++R RVLR+L KYR KKIDRH+Y
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120
Query: 142 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVK 2
H +YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ EA+R K K
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNK 167
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 242 bits (593), Expect = 9e-65
Identities = 111/167 (66%), Positives = 134/167 (80%)
Frame = -2
Query: 502 MSSLKLQKRLAASVMRCGKXKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 323
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 322 ARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRTAKKIDRHLY 143
+R RK A+ KGRH G+GKR+GT A +P K LW++R RVLR+L KYR KKID+H+Y
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120
Query: 142 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVK 2
H +YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ EA+R K K
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNK 167
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = -2
Query: 214 QRQRVLRKLXLKYRTAKKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 56
+R ++L++L K+ KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 13 RRLKMLKRLLKKFCWNKKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 30.3 bits (65), Expect = 0.84
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -2
Query: 181 KYRTAKKIDRHLYHSLYMKAKGNVFKNKRVL 89
+Y A K+++ +Y Y KAKG + KN+RVL
Sbjct: 866 EYEMAGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At5g24430.1 68418.m02879 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK1 [Nicotiana tabacum]
gi|16904222|gb|AAL30818
Length = 594
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 181 KYRTAKKIDR-HLYHSLYMKAKGNVFKNKRVLMEYIHRKK 65
KY K++ R H H+ + KAK KN+ V ++ I + K
Sbjct: 142 KYELGKEVGRGHFGHTCWAKAKKGKMKNQTVAVKIISKAK 181
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 328 SRARVRKNTEARRKGRHCGFGKRRGTANAXMPQKELWVQRQRVLRKLXLKYRT 170
SR+R R + +R +GR + R + + P+K+L +R L + K R+
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRS 261
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 2.6
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3
Query: 30 WSLSIFVLAFSAFFLWMYSMSTRL 101
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 364 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 245
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 342 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 437
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 11 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 127
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 426 GSNHTFXLPHRITEAASLFCSLRELI 503
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 364 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 251
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 232 QKELWVQRQRVLRKLXLKYRTAKKIDRHLYHSL 134
Q LW +RQR +R++ L+ RT + LY SL
Sbjct: 66 QMGLWYRRQRFVRRMVLEQRTPLMV-ASLYGSL 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,086,591
Number of Sequences: 28952
Number of extensions: 255083
Number of successful extensions: 691
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -