Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k24r
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    30   0.38 
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    30   0.38 
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    29   0.50 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    28   1.1  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   2.0  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   4.6  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   4.6  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    26   4.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   6.1  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    26   6.1  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   6.1  
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    25   8.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.1  
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    25   8.1  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 203 IEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEF 81
           +ED  +LPA   + +    S  P   + T+P  +P ++TEF
Sbjct: 646 MEDTRLLPASLELANTQGASNPPTSALPTVPVPLPSIITEF 686


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 361 FLKGGRITEPLLIIQNLPVLTLAKSP-LMMASLCTITLPCKTI 486
           + +GGR+   +  + NLPV T+   P L++    TI +P K +
Sbjct: 676 YFEGGRVPSEVYSLDNLPVGTIVNGPSLIVDKTQTIVVPPKAV 718


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
 Frame = -1

Query: 425 NVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKN 246
           +V   R CII   ++I    K     V    + +G +  +G N  +++A +   V IG N
Sbjct: 318 DVVLARSCIIKARTLIGAYTKVGDASVVANTI-IGRNCTIGSNCSIDSAFLWEDVVIGDN 376

Query: 245 VVIGRRCV-----LKDCCMIEDNSVLPAETIV 165
             IG+  +     + + C IED +++ A  ++
Sbjct: 377 CRIGKAILANSVKIGNNCSIEDGAIVAAGVVI 408



 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = -1

Query: 320 DHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYS 144
           + V +G+N  +  A++ + V IG N  I    ++    +I DN+++     + +F  +S
Sbjct: 369 EDVVIGDNCRIGKAILANSVKIGNNCSIEDGAIVAAGVVIGDNTIIEKNKRLTTFESHS 427


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 203 IEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFT---KSYYQHFLPT 48
           ++D S++   TI+ S+++Y G+   L   L   +P+ M  FT   KS Y    PT
Sbjct: 664 LKDRSIVTKTTIM-SWSKYQGTKESLFQFLSIYIPECMLPFTKLLKSIYSPDCPT 717


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 344 AFFPLQMGDHVFVGENTVVNAAVVGSY 264
           A + L+MGD VFV  +T     VV  Y
Sbjct: 288 AIYHLEMGDSVFVAAHTSAGKTVVAEY 314


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 485 IVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQM 324
           I+ H +   ++   IR     V TG +C+ +K       F  F      FPL++
Sbjct: 248 IIFHRETYTRTITEIRASKVRVLTGNYCLHAKSEEEPLEFSYFFHKYFTFPLRL 301


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 403  QNLPVLTLAKSPLMMASLCTITLP 474
            Q + VL+LA   L+MAS C ++LP
Sbjct: 1039 QMVQVLSLATFTLLMASTCIMSLP 1062


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 308 VGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIED 195
           + +N+ +  +++G    IGK VV+    +L D  ++ED
Sbjct: 378 IKDNSNIKKSIIGKNCVIGKGVVVS-NSILMDNIVVED 414


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 133  AGLPEYLAKEGTIVSAGRTELSSIMQQSLSTHLLPI 240
            AG+P  L K+  + + G     +I Q SLS  ++P+
Sbjct: 1041 AGVPTLLIKQENLCNNGSLLFEAIEQNSLSKVMIPL 1076


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 26/109 (23%), Positives = 46/109 (42%)
 Frame = -1

Query: 494 SQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDH 315
           S NI+  G V++   A I     N K G   +I     I    +   +       ++ DH
Sbjct: 249 SSNII--GNVLIDPSATIG---KNCKIGPNVVIGPNVTIGDGVR-LQRCAILKSSRVRDH 302

Query: 314 VFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETI 168
            +V  + V   + +GS+  +    V+G   V+ D   +   S+LP ++I
Sbjct: 303 AWVKSSIVGWNSTLGSWSRLENVSVLGDDVVVNDEIYVNGGSILPHKSI 351


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 8/175 (4%)
 Frame = -1

Query: 518 SRQTVLCGSQNIVLHGKVI--VQSDAIIRGDLANVKTGRFCI--ISKGSVIRPPFKKFSK 351
           S + ++ GS+ I LH + +  + S +II  D+A      F +  +   S    PF   S 
Sbjct: 342 SSKCIMSGSKIIELHMEKVKSLHSLSIICLDMAISYLMEFSLEDLFVASNFYQPFDSISS 401

Query: 350 GVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVV--IGRRCVLK--DCCMIEDNSVL 183
            V       G  +FV +    +   VGS  ++        G+R + +     +++  +++
Sbjct: 402 MVLSKQALEGLELFVNQT---DHTPVGSLFWVLDRTYTRFGQRMLQRWLQKPLVDKENII 458

Query: 182 PAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFTKSYYQHFLPTTA*G*IEHFY 18
                V   A  S S    I  +   +PDL    ++ YYQ   P+     ++ FY
Sbjct: 459 ERLDAVEELAFNSNSQVQAIRKMLYRLPDLEKGLSRIYYQRCTPSEMFHVLKGFY 513


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 290 VNAAVVGSYVYIGKNVVIGRRC 225
           V AA +  ++Y+ K V +GR C
Sbjct: 55  VRAAAIARHIYLRKQVGVGRLC 76


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 452 HFVRSLYRVKQYSESH 499
           HFVR +Y VK  S+SH
Sbjct: 420 HFVRKVYPVKSPSDSH 435


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 290 VNAAVVGSYVYIGKNVVIGRRC 225
           V AA +  ++Y+ K V +GR C
Sbjct: 55  VRAAAIARHIYLRKQVGVGRLC 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,151
Number of Sequences: 5004
Number of extensions: 57663
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)