Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k24r
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0449 + 3548389-3548503,3549282-3549425,3550087-3550212,355... 44 9e-05
07_03_1463 - 26722081-26722365,26722831-26722982,26723229-267233... 44 9e-05
02_03_0369 - 18239123-18239499,18242046-18242445 42 6e-04
07_01_0250 - 1864990-1865005,1865429-1865502,1865588-1865659,186... 41 0.001
01_02_0006 + 10118766-10118775,10119383-10119526,10120534-101206... 38 0.008
07_01_1029 - 8902771-8902805,8903135-8903256,8904097-8904425,890... 31 1.2
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 30 1.6
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 29 2.8
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801... 29 3.6
11_05_0094 - 18995278-18995757,18995843-18996188,18996774-189968... 28 6.4
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 28 6.4
05_07_0248 - 28651807-28651908,28652001-28652061,28652164-286522... 28 6.4
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 28 8.4
>12_01_0449 +
3548389-3548503,3549282-3549425,3550087-3550212,
3550468-3550619,3551118-3551402
Length = 273
Score = 44.4 bits (100), Expect = 9e-05
Identities = 31/123 (25%), Positives = 57/123 (46%)
Frame = -1
Query: 476 HGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGEN 297
HG I +I+RGD+ ++ G I S++ S V P +G++V +G +
Sbjct: 75 HGSSIWYG-SILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKV--LPTIIGNNVTIGHS 131
Query: 296 TVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITT 117
V++A V ++G + V++ M+ S++ T +PS + G+PA +
Sbjct: 132 AVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEVWVGNPAKFLRK 191
Query: 116 LPE 108
L E
Sbjct: 192 LTE 194
>07_03_1463 -
26722081-26722365,26722831-26722982,26723229-26723354,
26724190-26724333,26724901-26725015
Length = 273
Score = 44.4 bits (100), Expect = 9e-05
Identities = 32/136 (23%), Positives = 61/136 (44%)
Frame = -1
Query: 476 HGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGEN 297
HG I +I+RGD+ ++ G I S++ S V P +G+ V +G +
Sbjct: 75 HGSSIWYG-SILRGDVNSIHIGVGTNIQDNSLVHVSKANISGKV--LPTIIGNSVTIGHS 131
Query: 296 TVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITT 117
V++A +V ++G + V++ M+ S++ T +PS + G+PA +
Sbjct: 132 AVLHACIVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEVWVGNPAKFLRK 191
Query: 116 LPEAMPDLMTEFTKSY 69
L E + + +Y
Sbjct: 192 LTEEEMAFIAQSATNY 207
>02_03_0369 - 18239123-18239499,18242046-18242445
Length = 258
Score = 41.5 bits (93), Expect = 6e-04
Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 7/164 (4%)
Frame = -1
Query: 521 VSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVA 342
V+ + VL G + ++ V S A++RGDL + G + + V+ + G+
Sbjct: 80 VAPEAVLAGQ--VTVYDGASVWSGAVLRGDLNKITLGFCANVQERCVLHAAWSA-PTGLP 136
Query: 341 FFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 162
L + +V VG ++ + + IG++ ++ +++ ++E SVLP +P
Sbjct: 137 ADTL-VDRYVTVGAYCLLRSCTIEPECIIGQHSILMEGSLVETNSILEAGSVLPPGRRIP 195
Query: 161 SFARYSGSPAHLITTLPE----AMPDL---MTEFTKSYYQHFLP 51
+ ++G+PA + L +P L + + +S++ FLP
Sbjct: 196 TGELWAGNPARFVRKLTNEEIMEIPKLAVAINDLMQSHFSEFLP 239
>07_01_0250 -
1864990-1865005,1865429-1865502,1865588-1865659,
1865854-1865920,1866365-1866429,1866812-1866843,
1867250-1867326,1867445-1867646,1867733-1867859
Length = 243
Score = 40.7 bits (91), Expect = 0.001
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 3/128 (2%)
Frame = -1
Query: 506 VLCGSQNIVLHGKVIVQSDAI-IRGDLANVKTGRFCIISKGSVIRPPFKKFSKGV--AFF 336
V+ GS +V I QS I L+N G FC + G+ I F G
Sbjct: 89 VVVGSGAVVGPSVSIGQSTRIWYNVVLSNCSVGEFCTLHNGACIGQDGFGFFVGDDGQML 148
Query: 335 PLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSF 156
+++G+HV +G NT ++ +G YV +G V I + + NS + + P
Sbjct: 149 HVKIGNHVEIGANTCIDRGRLGDYVTLGGRVAIRDHVSIASKVRLAANSSVTKDIQKP-- 206
Query: 155 ARYSGSPA 132
Y G PA
Sbjct: 207 GDYGGFPA 214
>01_02_0006 +
10118766-10118775,10119383-10119526,10120534-10120659,
10120885-10121003,10121355-10121609
Length = 217
Score = 37.9 bits (84), Expect = 0.008
Identities = 31/126 (24%), Positives = 54/126 (42%)
Frame = -1
Query: 446 IIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGS 267
++RGD NV+ G I S++ S V FP +GD+V VG + V+ V
Sbjct: 49 VLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKV--FPTIIGDNVTVGHSAVLQGCTVED 106
Query: 266 YVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMT 87
++G L D ++E + ++ A +V + G+PA + L + +
Sbjct: 107 EAFVGMG------ATLLDGVVVEKHGMVAAGALV-----WGGNPAKFLRKLTDDEITFIK 155
Query: 86 EFTKSY 69
E +Y
Sbjct: 156 ESASNY 161
>07_01_1029 -
8902771-8902805,8903135-8903256,8904097-8904425,
8905435-8905530,8906126-8906257,8907244-8907348,
8907630-8907803,8908094-8908163,8908263-8908444,
8908669-8908778,8909778-8909882,8909965-8910043,
8910342-8910382,8910511-8910589,8910856-8910966
Length = 589
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = -1
Query: 404 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRR 228
C + S+++PP K+ KG+ F P GD ++ A V+ +++ +V+ R+
Sbjct: 193 CFFGELSIVKPPAKEVMKGL-FIPRLNGDGATADAIALLGALVMPHNLFLHSALVLSRK 250
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Frame = -1
Query: 431 LANVKTGRFCIISK-GSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYI 255
L K GR C I V P GV +GD + + + +
Sbjct: 1678 LLGAKIGRHCSIRAINPVANPELISVGDGV-----HLGDFCNIVPGFYSKGGFTSAEIKV 1732
Query: 254 GKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFA 153
+N V+G +L C++++N +L A ++ P A
Sbjct: 1733 QENTVVGSGSLLLPGCVLQENVILGALSVAPENA 1766
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 326 MGDHVFVGENTVVNAAVVGSYVYIGKNVVI 237
+G+ VGEN V+ +V+G IGKNV+I
Sbjct: 373 VGNGTSVGENCKVSNSVIGQGCNIGKNVLI 402
>07_01_0954 -
8016804-8016905,8017409-8017469,8017543-8017649,
8018278-8018382,8018460-8018546,8018631-8018711,
8018872-8018944,8019288-8019400,8019695-8019788,
8020060-8020115,8020212-8020295,8020384-8020476,
8020592-8020765,8020956-8021099,8021225-8021380
Length = 509
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 314 VFVGENTVVNAAVVGSYVYIGKNVVI 237
V VGENT++ ++ IGKNV+I
Sbjct: 447 VGVGENTIIRNCIIDKNARIGKNVMI 472
>11_05_0094 -
18995278-18995757,18995843-18996188,18996774-18996837,
18996924-18997078,18997377-18997618
Length = 428
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 464 IVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVA 342
++ +DA+ R D +V G+F ++ G RP F +G+A
Sbjct: 116 LILADALERDDGLSVPPGKFYLVDAGYAARPGFLPPYRGMA 156
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 464 IVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVN 285
+V DAI R D V G+F ++ G +P F +GV + + G + E + N
Sbjct: 211 VVLRDAIERTDGLRVPQGKFYLVDAGYGAKPRFLPPFRGVRYHLNEWGTNPVQNEKELFN 270
>05_07_0248 -
28651807-28651908,28652001-28652061,28652164-28652270,
28652369-28652473,28652556-28652642,28652814-28652894,
28653083-28653155,28653243-28653355,28653439-28653532,
28653633-28653688,28653779-28653865,28653975-28654064,
28654178-28654348,28654752-28654871,28654981-28655193
Length = 519
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 308 VGENTVVNAAVVGSYVYIGKNVVI 237
VGENT +N ++ +G+NVVI
Sbjct: 459 VGENTKINNCIIDMNARVGRNVVI 482
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 198 RQLSSTCRDYCPFFCKVFRKPSTPDHYITRSNARSDDRV 82
+Q+ S YCP C + ST D + RS DR+
Sbjct: 409 QQIFSDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRI 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,729,580
Number of Sequences: 37544
Number of extensions: 334932
Number of successful extensions: 740
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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