Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k24r
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9309| Best HMM Match : Hexapep (HMM E-Value=2.6e-08) 214 7e-56
SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9) 31 0.92
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 31 0.92
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.6
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86) 28 6.5
SB_8799| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 6.5
SB_3340| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0051) 28 8.6
SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65) 28 8.6
>SB_9309| Best HMM Match : Hexapep (HMM E-Value=2.6e-08)
Length = 235
Score = 214 bits (522), Expect = 7e-56
Identities = 106/178 (59%), Positives = 126/178 (70%)
Frame = -1
Query: 584 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 405
ME DT+YNK+EY+ET I+QSD IIRGDLANV+ GR
Sbjct: 1 MEATDTHYNKAEYIETT-----------------------IIQSDCIIRGDLANVRIGRQ 37
Query: 404 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 225
C+ISK SVIRPPFKKFSKGVAFFPL +GDHV + E+ VVNAA +GS+V+IGKN VIGRR
Sbjct: 38 CVISKRSVIRPPFKKFSKGVAFFPLHIGDHVMIEEDCVVNAAQIGSFVHIGKNCVIGRRS 97
Query: 224 VLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFTKSYYQHFLP 51
VLKDCC I DN+VLP ET+VP F +SGSP LPE M ++MT+ T++YYQHFLP
Sbjct: 98 VLKDCCAIADNTVLPPETVVPPFTLFSGSPGVFTAELPECMQEIMTDITRNYYQHFLP 155
>SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9)
Length = 379
Score = 31.1 bits (67), Expect = 0.92
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -1
Query: 524 KVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFS 354
K T+ CG L GK+I+Q R D++ ++ + CIIS+ S + FK +S
Sbjct: 213 KQGETTIDCGRCRKSL-GKLIIQQQYPGRADVSGIQLNKHCIISRNSDV---FKNYS 265
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = -1
Query: 275 VGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLI 123
+G IG + V+ + C++E +++P TI+ + ++ GSPA ++
Sbjct: 808 IGENSSIGTRSTVTLNTVINENCIVEPLTLVPDNTIIDANSQVKGSPAKVM 858
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 392 KGSVIRPPFKK-FSKGVAFFPLQMGDHVFVGENTVVNAAVVGSY 264
K + I+ +K+ +S+G F +Q G H F G N V A G Y
Sbjct: 2400 KKNPIQECYKRAYSRGYRMFSVQAGGHCFSGRNAHVTYAKYGPY 2443
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 504 HCLSAYFITGGSFYIFRFIVISVLEFHFQNIKLWSQLFFI 623
HCLS YFI +F ++ +V++VL F + I + FF+
Sbjct: 4 HCLSKYFIFTLNFIVWYMVVLAVL-FTLEIIAGFLSFFFV 42
>SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -1
Query: 332 LQMGDHVFVGEN-TVVNAAVVGSYVYIGKNVVIGRRC 225
L + +H+ N TV AAV+G+ +++ + ++GRRC
Sbjct: 24 LNLLNHLCTARNVTVAVAAVLGTSIWLFRRYLVGRRC 60
>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
Length = 809
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 270 AYNSCIHNSVLPNKNMITHLQGKK 341
AYNS N P N I HLQG++
Sbjct: 655 AYNSRTPNMTAPQSNQILHLQGQQ 678
>SB_8799| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 334
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +3
Query: 348 SFAEFFKRRSYHGAFADYTKSTCFNISQISSYDGITLYDHFTV*NNILRATEHCLSAYF 524
SF F +G+F +Y +T S + ++D FT +RA C S F
Sbjct: 18 SFISFACSEQKYGSFLNYFSTTHGKRSLSKLLKSVKVFDEFTCIRECIRAEGSCTSVNF 76
>SB_3340| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0051)
Length = 342
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 224 VLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTE 84
V +DC ++ D V P I+ +YSG A ++ + + D+ E
Sbjct: 272 VEEDCTLLYDTFVKPDRPIIDYNTKYSGITAEMLDGVTVKLADVQKE 318
>SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65)
Length = 498
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 311 FVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFAR 150
F+GENT + V +++ VIG C++ C IE + A + SF R
Sbjct: 295 FLGENTWLLILAVAAFLVRSIKAVIGTTCLI--CSAIEAPAATAAFFVSSSFLR 346
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,137,226
Number of Sequences: 59808
Number of extensions: 420584
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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